miRNA: 3'- -GGGUGGC-UGGUGCa-------------GUGGU--UCU--GCGC- -5'
miRNA: 3'- -GGGUG-GCUGG--------UGC---AGugGUuCUGCGC- -5'
miRNA: 3'- -GGGUGGCUGGUGcaGUGGuuCUGCGc -5'
Results 61 - 63 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2676 | 5' | -56.2 | NC_001491.2 | + | 131604 | 0.7 | 0.742014 |
|
Target: 5'- aCCCACCGcACCGCGaucgacaaccucugCGCCGcuGGAcuCGCGg -3' miRNA: 3'- -GGGUGGC-UGGUGCa-------------GUGGU--UCU--GCGC- -5' |
|||||||
| 2676 | 5' | -56.2 | NC_001491.2 | + | 145070 | 0.67 | 0.867078 |
|
Target: 5'- uCCCACgCGGCCgaggcugcGCGgucUCugCGcGACGCGg -3' miRNA: 3'- -GGGUG-GCUGG--------UGC---AGugGUuCUGCGC- -5' |
|||||||
| 2676 | 5' | -56.2 | NC_001491.2 | + | 147844 | 0.67 | 0.867078 |
|
Target: 5'- cCCCACUGGCCGCugUACC--GAUGCa -3' miRNA: 3'- -GGGUGGCUGGUGcaGUGGuuCUGCGc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home