Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2676 | 5' | -56.2 | NC_001491.2 | + | 75617 | 0.66 | 0.929429 |
Target: 5'- -aCGCUGguacuauacGCCGCGUCuaugguaauACCGGGAUGCGc -3' miRNA: 3'- ggGUGGC---------UGGUGCAG---------UGGUUCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 75149 | 0.68 | 0.836234 |
Target: 5'- aCCCACCGAUCcCGUCAac--GGCaGCGg -3' miRNA: 3'- -GGGUGGCUGGuGCAGUgguuCUG-CGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 69139 | 0.66 | 0.913079 |
Target: 5'- gCCCACCcccaaguCCACGUUAgCAcGugGCu -3' miRNA: 3'- -GGGUGGcu-----GGUGCAGUgGUuCugCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 68991 | 0.66 | 0.913079 |
Target: 5'- uCCCGgugUUGACCACG-CGCCGcaGGuACGCa -3' miRNA: 3'- -GGGU---GGCUGGUGCaGUGGU--UC-UGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 67217 | 1.11 | 0.002658 |
Target: 5'- uCCCACCGACCACGUCACCAAGACGCGa -3' miRNA: 3'- -GGGUGGCUGGUGCAGUGGUUCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 62972 | 0.69 | 0.819715 |
Target: 5'- aCCACCagacGCCAgGa-GCCAGGACGCa -3' miRNA: 3'- gGGUGGc---UGGUgCagUGGUUCUGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 58202 | 0.69 | 0.811206 |
Target: 5'- gCCACaGGCauaaGCGUCucCCGGGACGCu -3' miRNA: 3'- gGGUGgCUGg---UGCAGu-GGUUCUGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 53978 | 0.74 | 0.549749 |
Target: 5'- uCUCAUCGugCGCaaCACCGGGGCGCa -3' miRNA: 3'- -GGGUGGCugGUGcaGUGGUUCUGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 53150 | 0.71 | 0.706164 |
Target: 5'- aCCugUGGCCACG-CGCUAGGggcuaggucugccaGCGCGg -3' miRNA: 3'- gGGugGCUGGUGCaGUGGUUC--------------UGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 52667 | 0.68 | 0.836234 |
Target: 5'- gCCACCG-CCu--UCACCcgcAGACGCGg -3' miRNA: 3'- gGGUGGCuGGugcAGUGGu--UCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 52622 | 0.71 | 0.709107 |
Target: 5'- cUCCACCGACacauuUACGaUCGCCGcccgcggagAGACGUGg -3' miRNA: 3'- -GGGUGGCUG-----GUGC-AGUGGU---------UCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 52405 | 0.66 | 0.913079 |
Target: 5'- --aAUCuGCCAUGUCGCCGcGACGCu -3' miRNA: 3'- gggUGGcUGGUGCAGUGGUuCUGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 50016 | 0.66 | 0.918758 |
Target: 5'- cCCCuccuucaCGACCACGUCggucACUGacaugagaguAGACGCGu -3' miRNA: 3'- -GGGug-----GCUGGUGCAG----UGGU----------UCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 42496 | 0.68 | 0.859658 |
Target: 5'- gCCAggauCCGuACCACG-CGCCGggccAGGCGCa -3' miRNA: 3'- gGGU----GGC-UGGUGCaGUGGU----UCUGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 42048 | 0.68 | 0.844229 |
Target: 5'- gCCugUGAUCACGagACCGAGGCa-- -3' miRNA: 3'- gGGugGCUGGUGCagUGGUUCUGcgc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 37105 | 0.67 | 0.8881 |
Target: 5'- aCUACCGcCUACGUCACUAccGGACu-- -3' miRNA: 3'- gGGUGGCuGGUGCAGUGGU--UCUGcgc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 34296 | 0.67 | 0.874295 |
Target: 5'- cUCC-CCGGcCCACcUCAgCCAGGAgGCGa -3' miRNA: 3'- -GGGuGGCU-GGUGcAGU-GGUUCUgCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 34102 | 0.67 | 0.894031 |
Target: 5'- cCCCugUGGCCcacCGUCcCCGGGAagcagucCGCGa -3' miRNA: 3'- -GGGugGCUGGu--GCAGuGGUUCU-------GCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 33914 | 0.66 | 0.913079 |
Target: 5'- gCCCGggccUCGGCCuggACGUCACCcAGGcCGUGu -3' miRNA: 3'- -GGGU----GGCUGG---UGCAGUGGuUCU-GCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 33688 | 0.67 | 0.901037 |
Target: 5'- uCCCGCCuGCC-C-UC-CCGAGGCGCu -3' miRNA: 3'- -GGGUGGcUGGuGcAGuGGUUCUGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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