miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2676 5' -56.2 NC_001491.2 + 32954 0.68 0.844229
Target:  5'- gCCGCC--UCGCGcuaCGCCGAGGCGCa -3'
miRNA:   3'- gGGUGGcuGGUGCa--GUGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 32514 0.68 0.859658
Target:  5'- gUCCGCgaGGCCAaucUgGCCAAGACGCu -3'
miRNA:   3'- -GGGUGg-CUGGUgc-AgUGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 31987 0.7 0.757151
Target:  5'- gUCGCCgGGCCACGggcuccucaUCACCcggcggugGGGACGCGg -3'
miRNA:   3'- gGGUGG-CUGGUGC---------AGUGG--------UUCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 29069 0.68 0.84185
Target:  5'- aCCACCGACCACcgacCACCAccgaucucaugggcAGAcccacuCGCGa -3'
miRNA:   3'- gGGUGGCUGGUGca--GUGGU--------------UCU------GCGC- -5'
2676 5' -56.2 NC_001491.2 + 29013 0.66 0.93442
Target:  5'- aCCACCGACCACcgacCACCGAccaccGAC-Ca -3'
miRNA:   3'- gGGUGGCUGGUGca--GUGGUU-----CUGcGc -5'
2676 5' -56.2 NC_001491.2 + 28978 0.66 0.93442
Target:  5'- aCCACCGACCACcgacCACCGAccaccGAC-Ca -3'
miRNA:   3'- gGGUGGCUGGUGca--GUGGUU-----CUGcGc -5'
2676 5' -56.2 NC_001491.2 + 27587 0.69 0.811206
Target:  5'- uCCC-CCGACCuCGcC-CCGAGuCGCGu -3'
miRNA:   3'- -GGGuGGCUGGuGCaGuGGUUCuGCGC- -5'
2676 5' -56.2 NC_001491.2 + 27178 0.7 0.738191
Target:  5'- cCCCACgGAgCGCGgCAgCGAGACcGCGu -3'
miRNA:   3'- -GGGUGgCUgGUGCaGUgGUUCUG-CGC- -5'
2676 5' -56.2 NC_001491.2 + 26807 0.69 0.810346
Target:  5'- gUCCGCCGGCgGCGUCuccccgaucccgaGCCGGGucucgaaaaaccGCGCa -3'
miRNA:   3'- -GGGUGGCUGgUGCAG-------------UGGUUC------------UGCGc -5'
2676 5' -56.2 NC_001491.2 + 26701 0.68 0.836234
Target:  5'- gCUugCGGCCGCGggCGCgCAGGuACGCc -3'
miRNA:   3'- gGGugGCUGGUGCa-GUG-GUUC-UGCGc -5'
2676 5' -56.2 NC_001491.2 + 25146 0.66 0.913079
Target:  5'- cUCCAgCGGCgAgGaggCGCCGAGAgGCGa -3'
miRNA:   3'- -GGGUgGCUGgUgCa--GUGGUUCUgCGC- -5'
2676 5' -56.2 NC_001491.2 + 25027 0.66 0.924209
Target:  5'- gCCGCC-ACCGCcggCACCGAGgucuuccgcuGCGCGc -3'
miRNA:   3'- gGGUGGcUGGUGca-GUGGUUC----------UGCGC- -5'
2676 5' -56.2 NC_001491.2 + 24700 0.7 0.738191
Target:  5'- gCCCGCuCGGuCCACGgccgcCGCCGcGACGCc -3'
miRNA:   3'- -GGGUG-GCU-GGUGCa----GUGGUuCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 12605 0.66 0.918758
Target:  5'- gCCGCCG-CCGCGgCAgcggccgccCCGGGGCGgGa -3'
miRNA:   3'- gGGUGGCuGGUGCaGU---------GGUUCUGCgC- -5'
2676 5' -56.2 NC_001491.2 + 12115 0.69 0.77477
Target:  5'- cCCCcCCGGCCGCGgcugCggcgaagguggggGCCAAGACGa- -3'
miRNA:   3'- -GGGuGGCUGGUGCa---G-------------UGGUUCUGCgc -5'
2676 5' -56.2 NC_001491.2 + 8751 0.69 0.775685
Target:  5'- aUCCACCuccucGAuCCACGUgACCGAGGacuCGCGc -3'
miRNA:   3'- -GGGUGG-----CU-GGUGCAgUGGUUCU---GCGC- -5'
2676 5' -56.2 NC_001491.2 + 3890 0.72 0.606329
Target:  5'- cCCCGCCucgucucucggguaGGCCAUGUcCGCguAGGCGCGc -3'
miRNA:   3'- -GGGUGG--------------CUGGUGCA-GUGguUCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 3471 0.67 0.901037
Target:  5'- gCCCGCuCGACCAgGUCcCUGAGuuCGUa -3'
miRNA:   3'- -GGGUG-GCUGGUgCAGuGGUUCu-GCGc -5'
2676 5' -56.2 NC_001491.2 + 3390 0.66 0.913079
Target:  5'- aCCACCaGaACgGCGcgCACCGcgAGGCGCa -3'
miRNA:   3'- gGGUGG-C-UGgUGCa-GUGGU--UCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 2611 0.72 0.649469
Target:  5'- gCCgCGCaaGCCGCGUCGCUggGcCGCGg -3'
miRNA:   3'- -GG-GUGgcUGGUGCAGUGGuuCuGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.