miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2676 5' -56.2 NC_001491.2 + 89217 0.66 0.924209
Target:  5'- aCUCACCG-CCGCGcaaaacccgCGCCu-GGCGCa -3'
miRNA:   3'- -GGGUGGCuGGUGCa--------GUGGuuCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 81512 0.66 0.924209
Target:  5'- -aCGCCG-CCACGcC-CCAGGuaaACGCGa -3'
miRNA:   3'- ggGUGGCuGGUGCaGuGGUUC---UGCGC- -5'
2676 5' -56.2 NC_001491.2 + 112204 0.66 0.924209
Target:  5'- -aCACCcACgGCGUCGCCAAGgucauACGgGg -3'
miRNA:   3'- ggGUGGcUGgUGCAGUGGUUC-----UGCgC- -5'
2676 5' -56.2 NC_001491.2 + 75617 0.66 0.929429
Target:  5'- -aCGCUGguacuauacGCCGCGUCuaugguaauACCGGGAUGCGc -3'
miRNA:   3'- ggGUGGC---------UGGUGCAG---------UGGUUCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 28978 0.66 0.93442
Target:  5'- aCCACCGACCACcgacCACCGAccaccGAC-Ca -3'
miRNA:   3'- gGGUGGCUGGUGca--GUGGUU-----CUGcGc -5'
2676 5' -56.2 NC_001491.2 + 68991 0.66 0.913079
Target:  5'- uCCCGgugUUGACCACG-CGCCGcaGGuACGCa -3'
miRNA:   3'- -GGGU---GGCUGGUGCaGUGGU--UC-UGCGc -5'
2676 5' -56.2 NC_001491.2 + 52405 0.66 0.913079
Target:  5'- --aAUCuGCCAUGUCGCCGcGACGCu -3'
miRNA:   3'- gggUGGcUGGUGCAGUGGUuCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 145070 0.67 0.867078
Target:  5'- uCCCACgCGGCCgaggcugcGCGgucUCugCGcGACGCGg -3'
miRNA:   3'- -GGGUG-GCUGG--------UGC---AGugGUuCUGCGC- -5'
2676 5' -56.2 NC_001491.2 + 147844 0.67 0.867078
Target:  5'- cCCCACUGGCCGCugUACC--GAUGCa -3'
miRNA:   3'- -GGGUGGCUGGUGcaGUGGuuCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 34296 0.67 0.874295
Target:  5'- cUCC-CCGGcCCACcUCAgCCAGGAgGCGa -3'
miRNA:   3'- -GGGuGGCU-GGUGcAGU-GGUUCUgCGC- -5'
2676 5' -56.2 NC_001491.2 + 95140 0.67 0.877124
Target:  5'- cCCCGCCGACCagcgacgcgguguacACGUgggCACCuuGGAgCGCc -3'
miRNA:   3'- -GGGUGGCUGG---------------UGCA---GUGGu-UCU-GCGc -5'
2676 5' -56.2 NC_001491.2 + 37105 0.67 0.8881
Target:  5'- aCUACCGcCUACGUCACUAccGGACu-- -3'
miRNA:   3'- gGGUGGCuGGUGCAGUGGU--UCUGcgc -5'
2676 5' -56.2 NC_001491.2 + 34102 0.67 0.894031
Target:  5'- cCCCugUGGCCcacCGUCcCCGGGAagcagucCGCGa -3'
miRNA:   3'- -GGGugGCUGGu--GCAGuGGUUCU-------GCGC- -5'
2676 5' -56.2 NC_001491.2 + 3471 0.67 0.901037
Target:  5'- gCCCGCuCGACCAgGUCcCUGAGuuCGUa -3'
miRNA:   3'- -GGGUG-GCUGGUgCAGuGGUUCu-GCGc -5'
2676 5' -56.2 NC_001491.2 + 33688 0.67 0.901037
Target:  5'- uCCCGCCuGCC-C-UC-CCGAGGCGCu -3'
miRNA:   3'- -GGGUGGcUGGuGcAGuGGUUCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 91776 0.66 0.907171
Target:  5'- gUCCACgCGGCCGgGUUAgacCCGAGcCGCu -3'
miRNA:   3'- -GGGUG-GCUGGUgCAGU---GGUUCuGCGc -5'
2676 5' -56.2 NC_001491.2 + 117598 0.66 0.909561
Target:  5'- aCCACCucgauGCCAuuggauCGUCACCAucaagcaccccacccGGGCGCa -3'
miRNA:   3'- gGGUGGc----UGGU------GCAGUGGU---------------UCUGCGc -5'
2676 5' -56.2 NC_001491.2 + 25146 0.66 0.913079
Target:  5'- cUCCAgCGGCgAgGaggCGCCGAGAgGCGa -3'
miRNA:   3'- -GGGUgGCUGgUgCa--GUGGUUCUgCGC- -5'
2676 5' -56.2 NC_001491.2 + 69139 0.66 0.913079
Target:  5'- gCCCACCcccaaguCCACGUUAgCAcGugGCu -3'
miRNA:   3'- -GGGUGGcu-----GGUGCAGUgGUuCugCGc -5'
2676 5' -56.2 NC_001491.2 + 33914 0.66 0.913079
Target:  5'- gCCCGggccUCGGCCuggACGUCACCcAGGcCGUGu -3'
miRNA:   3'- -GGGU----GGCUGG---UGCAGUGGuUCU-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.