Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2676 | 5' | -56.2 | NC_001491.2 | + | 89217 | 0.66 | 0.924209 |
Target: 5'- aCUCACCG-CCGCGcaaaacccgCGCCu-GGCGCa -3' miRNA: 3'- -GGGUGGCuGGUGCa--------GUGGuuCUGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 81512 | 0.66 | 0.924209 |
Target: 5'- -aCGCCG-CCACGcC-CCAGGuaaACGCGa -3' miRNA: 3'- ggGUGGCuGGUGCaGuGGUUC---UGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 112204 | 0.66 | 0.924209 |
Target: 5'- -aCACCcACgGCGUCGCCAAGgucauACGgGg -3' miRNA: 3'- ggGUGGcUGgUGCAGUGGUUC-----UGCgC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 75617 | 0.66 | 0.929429 |
Target: 5'- -aCGCUGguacuauacGCCGCGUCuaugguaauACCGGGAUGCGc -3' miRNA: 3'- ggGUGGC---------UGGUGCAG---------UGGUUCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 28978 | 0.66 | 0.93442 |
Target: 5'- aCCACCGACCACcgacCACCGAccaccGAC-Ca -3' miRNA: 3'- gGGUGGCUGGUGca--GUGGUU-----CUGcGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 68991 | 0.66 | 0.913079 |
Target: 5'- uCCCGgugUUGACCACG-CGCCGcaGGuACGCa -3' miRNA: 3'- -GGGU---GGCUGGUGCaGUGGU--UC-UGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 52405 | 0.66 | 0.913079 |
Target: 5'- --aAUCuGCCAUGUCGCCGcGACGCu -3' miRNA: 3'- gggUGGcUGGUGCAGUGGUuCUGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 145070 | 0.67 | 0.867078 |
Target: 5'- uCCCACgCGGCCgaggcugcGCGgucUCugCGcGACGCGg -3' miRNA: 3'- -GGGUG-GCUGG--------UGC---AGugGUuCUGCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 147844 | 0.67 | 0.867078 |
Target: 5'- cCCCACUGGCCGCugUACC--GAUGCa -3' miRNA: 3'- -GGGUGGCUGGUGcaGUGGuuCUGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 34296 | 0.67 | 0.874295 |
Target: 5'- cUCC-CCGGcCCACcUCAgCCAGGAgGCGa -3' miRNA: 3'- -GGGuGGCU-GGUGcAGU-GGUUCUgCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 95140 | 0.67 | 0.877124 |
Target: 5'- cCCCGCCGACCagcgacgcgguguacACGUgggCACCuuGGAgCGCc -3' miRNA: 3'- -GGGUGGCUGG---------------UGCA---GUGGu-UCU-GCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 37105 | 0.67 | 0.8881 |
Target: 5'- aCUACCGcCUACGUCACUAccGGACu-- -3' miRNA: 3'- gGGUGGCuGGUGCAGUGGU--UCUGcgc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 34102 | 0.67 | 0.894031 |
Target: 5'- cCCCugUGGCCcacCGUCcCCGGGAagcagucCGCGa -3' miRNA: 3'- -GGGugGCUGGu--GCAGuGGUUCU-------GCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 3471 | 0.67 | 0.901037 |
Target: 5'- gCCCGCuCGACCAgGUCcCUGAGuuCGUa -3' miRNA: 3'- -GGGUG-GCUGGUgCAGuGGUUCu-GCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 33688 | 0.67 | 0.901037 |
Target: 5'- uCCCGCCuGCC-C-UC-CCGAGGCGCu -3' miRNA: 3'- -GGGUGGcUGGuGcAGuGGUUCUGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 91776 | 0.66 | 0.907171 |
Target: 5'- gUCCACgCGGCCGgGUUAgacCCGAGcCGCu -3' miRNA: 3'- -GGGUG-GCUGGUgCAGU---GGUUCuGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 117598 | 0.66 | 0.909561 |
Target: 5'- aCCACCucgauGCCAuuggauCGUCACCAucaagcaccccacccGGGCGCa -3' miRNA: 3'- gGGUGGc----UGGU------GCAGUGGU---------------UCUGCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 25146 | 0.66 | 0.913079 |
Target: 5'- cUCCAgCGGCgAgGaggCGCCGAGAgGCGa -3' miRNA: 3'- -GGGUgGCUGgUgCa--GUGGUUCUgCGC- -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 69139 | 0.66 | 0.913079 |
Target: 5'- gCCCACCcccaaguCCACGUUAgCAcGugGCu -3' miRNA: 3'- -GGGUGGcu-----GGUGCAGUgGUuCugCGc -5' |
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2676 | 5' | -56.2 | NC_001491.2 | + | 33914 | 0.66 | 0.913079 |
Target: 5'- gCCCGggccUCGGCCuggACGUCACCcAGGcCGUGu -3' miRNA: 3'- -GGGU----GGCUGG---UGCAGUGGuUCU-GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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