miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26760 3' -54.4 NC_005808.1 + 21177 0.67 0.653268
Target:  5'- cGCGGCc----UGCUGcGCGGCCUGCUGc -3'
miRNA:   3'- -CGCUGuaacuGCGGC-UGCUGGACGAC- -5'
26760 3' -54.4 NC_005808.1 + 31032 0.67 0.653267
Target:  5'- gGCGGCA-UGGCuUCGAUGACCgGCg- -3'
miRNA:   3'- -CGCUGUaACUGcGGCUGCUGGaCGac -5'
26760 3' -54.4 NC_005808.1 + 31727 0.67 0.652147
Target:  5'- cGCGcGCAUc-GCGCCGACcgaagccacgcagGGCCUGCUc -3'
miRNA:   3'- -CGC-UGUAacUGCGGCUG-------------CUGGACGAc -5'
26760 3' -54.4 NC_005808.1 + 9296 0.67 0.642059
Target:  5'- uGCG-CAUUGACuuccUCGGCGACCUgGCg- -3'
miRNA:   3'- -CGCuGUAACUGc---GGCUGCUGGA-CGac -5'
26760 3' -54.4 NC_005808.1 + 20736 0.67 0.642059
Target:  5'- cCGACAUgcugcUGGCGCCGuagaGGCgCUGCg- -3'
miRNA:   3'- cGCUGUA-----ACUGCGGCug--CUG-GACGac -5'
26760 3' -54.4 NC_005808.1 + 2348 0.67 0.642059
Target:  5'- gGCGcGCGU--GCGCCGcaauuCGGCCUGCa- -3'
miRNA:   3'- -CGC-UGUAacUGCGGCu----GCUGGACGac -5'
26760 3' -54.4 NC_005808.1 + 41919 0.67 0.642058
Target:  5'- cCGGCc--GGCGCCGccguagGCGGCCUGgUGg -3'
miRNA:   3'- cGCUGuaaCUGCGGC------UGCUGGACgAC- -5'
26760 3' -54.4 NC_005808.1 + 34668 0.67 0.63084
Target:  5'- cGUGGCGUgaaggugGACGCCGAgcgcaaCGAgCaGCUGg -3'
miRNA:   3'- -CGCUGUAa------CUGCGGCU------GCUgGaCGAC- -5'
26760 3' -54.4 NC_005808.1 + 21826 0.67 0.63084
Target:  5'- aGCGGCggGUUGcucuuguaGUCGAUGGCCUGCg- -3'
miRNA:   3'- -CGCUG--UAACug------CGGCUGCUGGACGac -5'
26760 3' -54.4 NC_005808.1 + 14581 0.67 0.63084
Target:  5'- -gGGC--UGAUGCCGGCGGCCgauccGCUu -3'
miRNA:   3'- cgCUGuaACUGCGGCUGCUGGa----CGAc -5'
26760 3' -54.4 NC_005808.1 + 4615 0.67 0.630839
Target:  5'- uCGGCGaUGAUGUCGGCGGggaUGCUGg -3'
miRNA:   3'- cGCUGUaACUGCGGCUGCUgg-ACGAC- -5'
26760 3' -54.4 NC_005808.1 + 42175 0.67 0.630839
Target:  5'- aCGACAagGuACgGCCGACGAUcaccgccgugCUGCUGg -3'
miRNA:   3'- cGCUGUaaC-UG-CGGCUGCUG----------GACGAC- -5'
26760 3' -54.4 NC_005808.1 + 9906 0.67 0.619622
Target:  5'- cGCGGCGagcACGUCGGCGAaCUGCUc -3'
miRNA:   3'- -CGCUGUaacUGCGGCUGCUgGACGAc -5'
26760 3' -54.4 NC_005808.1 + 28906 0.67 0.619622
Target:  5'- -gGGCAgaugGACGCCGACGACauccucacggUGCg- -3'
miRNA:   3'- cgCUGUaa--CUGCGGCUGCUGg---------ACGac -5'
26760 3' -54.4 NC_005808.1 + 7522 0.67 0.619622
Target:  5'- aUGGCGUUGucuaccguGCGCuCGGCGGCgUGCUc -3'
miRNA:   3'- cGCUGUAAC--------UGCG-GCUGCUGgACGAc -5'
26760 3' -54.4 NC_005808.1 + 36201 0.68 0.608416
Target:  5'- aCGACAUcaccgagGGCGCCGcggcggcCGACCUGgUGu -3'
miRNA:   3'- cGCUGUAa------CUGCGGCu------GCUGGACgAC- -5'
26760 3' -54.4 NC_005808.1 + 12611 0.68 0.608416
Target:  5'- uGCG-CA-UGGCGCCGACGcGCUcggcaucgcUGCUGc -3'
miRNA:   3'- -CGCuGUaACUGCGGCUGC-UGG---------ACGAC- -5'
26760 3' -54.4 NC_005808.1 + 18237 0.68 0.597232
Target:  5'- aGCcACGUUcugcugGAUGCCGgucACGACCUGCg- -3'
miRNA:   3'- -CGcUGUAA------CUGCGGC---UGCUGGACGac -5'
26760 3' -54.4 NC_005808.1 + 30980 0.68 0.597232
Target:  5'- uCGGCG-UGACgGUgGACGAUCUGCUc -3'
miRNA:   3'- cGCUGUaACUG-CGgCUGCUGGACGAc -5'
26760 3' -54.4 NC_005808.1 + 18896 0.68 0.597231
Target:  5'- cGCGACcugGGCGCUacCGGCCUGUa- -3'
miRNA:   3'- -CGCUGuaaCUGCGGcuGCUGGACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.