miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26760 5' -59 NC_005808.1 + 7680 0.66 0.467116
Target:  5'- gGCCAGGucGUCGggcuugaccucGGcGGCcGGCuuGCCg -3'
miRNA:   3'- -CGGUCCuuCAGCau---------CC-CCGaCCG--CGG- -5'
26760 5' -59 NC_005808.1 + 10569 0.66 0.467116
Target:  5'- cGCCGGGuucaauGUCGUGGGcguccagcgugucgaGgguuucgcacaggacGCUGGCGUCg -3'
miRNA:   3'- -CGGUCCuu----CAGCAUCC---------------C---------------CGACCGCGG- -5'
26760 5' -59 NC_005808.1 + 25334 0.66 0.463144
Target:  5'- cGCCGGGAuuguccaggccggccAGuUCGcaUAGccggccaccGGGCaGGCGCCa -3'
miRNA:   3'- -CGGUCCU---------------UC-AGC--AUC---------CCCGaCCGCGG- -5'
26760 5' -59 NC_005808.1 + 12717 0.66 0.459189
Target:  5'- uGCCGGGG------GGGGGgUGGUGCUa -3'
miRNA:   3'- -CGGUCCUucagcaUCCCCgACCGCGG- -5'
26760 5' -59 NC_005808.1 + 15161 0.66 0.449381
Target:  5'- cGCCAGGGccugcGGcCGccGGGcGCgGuGCGCCa -3'
miRNA:   3'- -CGGUCCU-----UCaGCauCCC-CGaC-CGCGG- -5'
26760 5' -59 NC_005808.1 + 39747 0.66 0.43969
Target:  5'- aCCAGGccccUCGcuGGuGCUGGCGCCg -3'
miRNA:   3'- cGGUCCuuc-AGCauCCcCGACCGCGG- -5'
26760 5' -59 NC_005808.1 + 9762 0.67 0.411352
Target:  5'- gGCCAGGcgAAGcCGUuGcGGCUGGUGUa -3'
miRNA:   3'- -CGGUCC--UUCaGCAuCcCCGACCGCGg -5'
26760 5' -59 NC_005808.1 + 28985 0.67 0.390408
Target:  5'- aGCCAGGu-GUCGUAGuccucguuaucgacGuaGGCgaccaGGCGCCg -3'
miRNA:   3'- -CGGUCCuuCAGCAUC--------------C--CCGa----CCGCGG- -5'
26760 5' -59 NC_005808.1 + 6591 0.67 0.384174
Target:  5'- gGCCAGGggGcugcggucuUUGUcgaugaccAGcGGGCgcgUGGCGCUg -3'
miRNA:   3'- -CGGUCCuuC---------AGCA--------UC-CCCG---ACCGCGG- -5'
26760 5' -59 NC_005808.1 + 10498 0.67 0.374511
Target:  5'- gGCCAGGGcguugagcaacgcGGcCGUGuuggcGGGGCcgaugagcaUGGCGUCg -3'
miRNA:   3'- -CGGUCCU-------------UCaGCAU-----CCCCG---------ACCGCGG- -5'
26760 5' -59 NC_005808.1 + 13306 0.68 0.35317
Target:  5'- cGCCGGGGccggcGUUGUAGGcGGCguaggcuuucggcaGGuCGCCg -3'
miRNA:   3'- -CGGUCCUu----CAGCAUCC-CCGa-------------CC-GCGG- -5'
26760 5' -59 NC_005808.1 + 6659 0.68 0.349836
Target:  5'- uGCCGGGGAagccGUCGUAGuuGGCcuugaGGuCGCCa -3'
miRNA:   3'- -CGGUCCUU----CAGCAUCc-CCGa----CC-GCGG- -5'
26760 5' -59 NC_005808.1 + 23924 0.68 0.349836
Target:  5'- cGCguGGu-GUaacaGgccGGGGGCgGGCGCCg -3'
miRNA:   3'- -CGguCCuuCAg---Ca--UCCCCGaCCGCGG- -5'
26760 5' -59 NC_005808.1 + 8571 0.68 0.3416
Target:  5'- uCCuGGgcGUCGUAGGccgcgcgugcGGcCUGGUGCUg -3'
miRNA:   3'- cGGuCCuuCAGCAUCC----------CC-GACCGCGG- -5'
26760 5' -59 NC_005808.1 + 5101 0.68 0.3416
Target:  5'- gGCCGGcccAG-CGUccGGuGcGGCUGGCGCCg -3'
miRNA:   3'- -CGGUCcu-UCaGCA--UC-C-CCGACCGCGG- -5'
26760 5' -59 NC_005808.1 + 10152 0.68 0.325552
Target:  5'- -gUAGGggG-CGUAGGGGCagucGCuGCCg -3'
miRNA:   3'- cgGUCCuuCaGCAUCCCCGac--CG-CGG- -5'
26760 5' -59 NC_005808.1 + 2538 0.69 0.31007
Target:  5'- aCCAGGAAuUCGcggUAGGGGCc-GCGCUc -3'
miRNA:   3'- cGGUCCUUcAGC---AUCCCCGacCGCGG- -5'
26760 5' -59 NC_005808.1 + 24121 0.69 0.31007
Target:  5'- cGCgUAGG-GGUCGUAGuccagccGGCUGcGCGCCu -3'
miRNA:   3'- -CG-GUCCuUCAGCAUCc------CCGAC-CGCGG- -5'
26760 5' -59 NC_005808.1 + 7170 0.69 0.28791
Target:  5'- gGCCGGGcgcuuGUCGgauucGGGGGCgacgcugGGCuuGCCa -3'
miRNA:   3'- -CGGUCCuu---CAGCa----UCCCCGa------CCG--CGG- -5'
26760 5' -59 NC_005808.1 + 3801 0.72 0.190394
Target:  5'- cGCCuGGAAuucGUUGUAGuuGGGCaGGCGCUu -3'
miRNA:   3'- -CGGuCCUU---CAGCAUC--CCCGaCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.