Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26761 | 5' | -55.8 | NC_005808.1 | + | 25036 | 1.08 | 0.000906 |
Target: 5'- uCAAACCACGUGUCGCGCGAUCCGCCGu -3' miRNA: 3'- -GUUUGGUGCACAGCGCGCUAGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 30265 | 0.76 | 0.179514 |
Target: 5'- -uAGCUGCGcugGUCGCGCGAgUCGCCGg -3' miRNA: 3'- guUUGGUGCa--CAGCGCGCUaGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 30350 | 0.75 | 0.205453 |
Target: 5'- -uGGCCuuGUcGUCGCGCGAgaacCCGCCGc -3' miRNA: 3'- guUUGGugCA-CAGCGCGCUa---GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 41437 | 0.74 | 0.247164 |
Target: 5'- gAGACUAUGUGggGCGUGA-CCGCCGc -3' miRNA: 3'- gUUUGGUGCACagCGCGCUaGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 18407 | 0.72 | 0.310793 |
Target: 5'- -cGGCCACGUcggcgaagGUgGCGUuGUCCGCCGa -3' miRNA: 3'- guUUGGUGCA--------CAgCGCGcUAGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 41856 | 0.72 | 0.28829 |
Target: 5'- -cAACUACGUGUCG-GUcAUCCGCCa -3' miRNA: 3'- guUUGGUGCACAGCgCGcUAGGCGGc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 29586 | 0.71 | 0.351211 |
Target: 5'- -cGGCCGCGcccaggCGCGCGGUuuGCCa -3' miRNA: 3'- guUUGGUGCaca---GCGCGCUAggCGGc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 32343 | 0.71 | 0.368392 |
Target: 5'- aCAAccGCCGCccagGUCGCuGCGGUcgCCGCCGa -3' miRNA: 3'- -GUU--UGGUGca--CAGCG-CGCUA--GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 19142 | 0.71 | 0.334608 |
Target: 5'- cCAcGCCgGCGUGUaCGCGCGAaccaUCCGCa- -3' miRNA: 3'- -GUuUGG-UGCACA-GCGCGCU----AGGCGgc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 34025 | 0.71 | 0.368392 |
Target: 5'- -uGACCGuCGUGUCGCGCcugUCGCUGc -3' miRNA: 3'- guUUGGU-GCACAGCGCGcuaGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 34976 | 0.7 | 0.376309 |
Target: 5'- aAGGCCACGUGUCcggcgcuGCGCGAccacgugcugUCCaCCGu -3' miRNA: 3'- gUUUGGUGCACAG-------CGCGCU----------AGGcGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 19490 | 0.7 | 0.423284 |
Target: 5'- --uACCGC-UGUCGcCGUGGgcgCCGCCGu -3' miRNA: 3'- guuUGGUGcACAGC-GCGCUa--GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 13916 | 0.7 | 0.394308 |
Target: 5'- uGAACgACGUGgcgCGCcgcgcugGCGAggCCGCCGg -3' miRNA: 3'- gUUUGgUGCACa--GCG-------CGCUa-GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 966 | 0.69 | 0.452506 |
Target: 5'- uCGAGCCACGUGUCGagccaGCccuucaCCGUCGc -3' miRNA: 3'- -GUUUGGUGCACAGCg----CGcua---GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 17399 | 0.69 | 0.436782 |
Target: 5'- cCGGGCCAgCG-GUCGCGCGugcucaugacauucaAcCCGCCGa -3' miRNA: 3'- -GUUUGGU-GCaCAGCGCGC---------------UaGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 40327 | 0.69 | 0.452506 |
Target: 5'- gCGAACCcaucgucaACGUGgugCGCGuCGAaCUGCCGg -3' miRNA: 3'- -GUUUGG--------UGCACa--GCGC-GCUaGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 26331 | 0.68 | 0.493108 |
Target: 5'- ---uCCGgGUGgccgCGCGCGAggccaacgccaUCCGCCa -3' miRNA: 3'- guuuGGUgCACa---GCGCGCU-----------AGGCGGc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 1034 | 0.68 | 0.53423 |
Target: 5'- aAGGCCACGgccggcggcagcaUGUCGcCGCGAaCCGgCGu -3' miRNA: 3'- gUUUGGUGC-------------ACAGC-GCGCUaGGCgGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 27698 | 0.68 | 0.524623 |
Target: 5'- aCAGGCCGCGcGcCGgcaGCGGcucgCCGCCGg -3' miRNA: 3'- -GUUUGGUGCaCaGCg--CGCUa---GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 24579 | 0.68 | 0.482795 |
Target: 5'- -cGGCCACG-GUCGgGCcGUCCGgCGu -3' miRNA: 3'- guUUGGUGCaCAGCgCGcUAGGCgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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