Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26761 | 5' | -55.8 | NC_005808.1 | + | 24543 | 0.66 | 0.633859 |
Target: 5'- -uGACCGCGUgGUCGCGCaGcgCgGCg- -3' miRNA: 3'- guUUGGUGCA-CAGCGCG-CuaGgCGgc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 1034 | 0.68 | 0.53423 |
Target: 5'- aAGGCCACGgccggcggcagcaUGUCGcCGCGAaCCGgCGu -3' miRNA: 3'- gUUUGGUGC-------------ACAGC-GCGCUaGGCgGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 32294 | 0.67 | 0.578691 |
Target: 5'- --cACCAgCGcGUUGCGCGAccucaucgCCGCCa -3' miRNA: 3'- guuUGGU-GCaCAGCGCGCUa-------GGCGGc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 36981 | 0.67 | 0.578691 |
Target: 5'- --cGCCGCGccaCGCGCGAaacgcaccCCGCCGa -3' miRNA: 3'- guuUGGUGCacaGCGCGCUa-------GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 2338 | 0.67 | 0.600687 |
Target: 5'- aGAAgUGCGUGgCGCGCG-UgCGCCGc -3' miRNA: 3'- gUUUgGUGCACaGCGCGCuAgGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 1096 | 0.66 | 0.611729 |
Target: 5'- --uGCCuuggcCGUGUCGCGCGGcaugucgcgcaUCgGCCc -3' miRNA: 3'- guuUGGu----GCACAGCGCGCU-----------AGgCGGc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 24652 | 0.66 | 0.621683 |
Target: 5'- gCGGGCCAgGaugguguUGUCGCGC---CCGCCGc -3' miRNA: 3'- -GUUUGGUgC-------ACAGCGCGcuaGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 10859 | 0.66 | 0.621683 |
Target: 5'- gCAGGCCcuGCGUggcuucgGUCgGCGCGAUgCGCgCGg -3' miRNA: 3'- -GUUUGG--UGCA-------CAG-CGCGCUAgGCG-GC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 9394 | 0.66 | 0.62279 |
Target: 5'- -cAGCCACugcaUGUCGCGCaggCCGCgGg -3' miRNA: 3'- guUUGGUGc---ACAGCGCGcuaGGCGgC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 27698 | 0.68 | 0.524623 |
Target: 5'- aCAGGCCGCGcGcCGgcaGCGGcucgCCGCCGg -3' miRNA: 3'- -GUUUGGUGCaCaGCg--CGCUa---GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 24579 | 0.68 | 0.482795 |
Target: 5'- -cGGCCACG-GUCGgGCcGUCCGgCGu -3' miRNA: 3'- guUUGGUGCaCAGCgCGcUAGGCgGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 40327 | 0.69 | 0.452506 |
Target: 5'- gCGAACCcaucgucaACGUGgugCGCGuCGAaCUGCCGg -3' miRNA: 3'- -GUUUGG--------UGCACa--GCGC-GCUaGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 30265 | 0.76 | 0.179514 |
Target: 5'- -uAGCUGCGcugGUCGCGCGAgUCGCCGg -3' miRNA: 3'- guUUGGUGCa--CAGCGCGCUaGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 30350 | 0.75 | 0.205453 |
Target: 5'- -uGGCCuuGUcGUCGCGCGAgaacCCGCCGc -3' miRNA: 3'- guUUGGugCA-CAGCGCGCUa---GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 41856 | 0.72 | 0.28829 |
Target: 5'- -cAACUACGUGUCG-GUcAUCCGCCa -3' miRNA: 3'- guUUGGUGCACAGCgCGcUAGGCGGc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 18407 | 0.72 | 0.310793 |
Target: 5'- -cGGCCACGUcggcgaagGUgGCGUuGUCCGCCGa -3' miRNA: 3'- guUUGGUGCA--------CAgCGCGcUAGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 29586 | 0.71 | 0.351211 |
Target: 5'- -cGGCCGCGcccaggCGCGCGGUuuGCCa -3' miRNA: 3'- guUUGGUGCaca---GCGCGCUAggCGGc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 34025 | 0.71 | 0.368392 |
Target: 5'- -uGACCGuCGUGUCGCGCcugUCGCUGc -3' miRNA: 3'- guUUGGU-GCACAGCGCGcuaGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 32343 | 0.71 | 0.368392 |
Target: 5'- aCAAccGCCGCccagGUCGCuGCGGUcgCCGCCGa -3' miRNA: 3'- -GUU--UGGUGca--CAGCG-CGCUA--GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 34976 | 0.7 | 0.376309 |
Target: 5'- aAGGCCACGUGUCcggcgcuGCGCGAccacgugcugUCCaCCGu -3' miRNA: 3'- gUUUGGUGCACAG-------CGCGCU----------AGGcGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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