Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26761 | 5' | -55.8 | NC_005808.1 | + | 34976 | 0.7 | 0.376309 |
Target: 5'- aAGGCCACGUGUCcggcgcuGCGCGAccacgugcugUCCaCCGu -3' miRNA: 3'- gUUUGGUGCACAG-------CGCGCU----------AGGcGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 40327 | 0.69 | 0.452506 |
Target: 5'- gCGAACCcaucgucaACGUGgugCGCGuCGAaCUGCCGg -3' miRNA: 3'- -GUUUGG--------UGCACa--GCGC-GCUaGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 24579 | 0.68 | 0.482795 |
Target: 5'- -cGGCCACG-GUCGgGCcGUCCGgCGu -3' miRNA: 3'- guUUGGUGCaCAGCgCGcUAGGCgGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 26768 | 0.67 | 0.546054 |
Target: 5'- aCGGACgGCGUGUucgaguccUGCGCGGUggUgGCCGa -3' miRNA: 3'- -GUUUGgUGCACA--------GCGCGCUA--GgCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 18516 | 0.67 | 0.600687 |
Target: 5'- --uGCC-CGUGcccCGCGCGGUC-GCCGc -3' miRNA: 3'- guuUGGuGCACa--GCGCGCUAGgCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 20411 | 0.67 | 0.600687 |
Target: 5'- cCAGAUCACG-GUCGCGCagauGGUgCGCg- -3' miRNA: 3'- -GUUUGGUGCaCAGCGCG----CUAgGCGgc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 23099 | 0.67 | 0.600687 |
Target: 5'- aAGACCACGguUCGCaGCGGcCUGCCc -3' miRNA: 3'- gUUUGGUGCacAGCG-CGCUaGGCGGc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 35497 | 0.66 | 0.62279 |
Target: 5'- gCAGuCCAuCGUG-CGCGUGggCgCGCCGu -3' miRNA: 3'- -GUUuGGU-GCACaGCGCGCuaG-GCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 2574 | 0.67 | 0.546054 |
Target: 5'- -cGGCCcagcGCGUG-CGCGCGcuugCCGCCc -3' miRNA: 3'- guUUGG----UGCACaGCGCGCua--GGCGGc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 26331 | 0.68 | 0.493108 |
Target: 5'- ---uCCGgGUGgccgCGCGCGAggccaacgccaUCCGCCa -3' miRNA: 3'- guuuGGUgCACa---GCGCGCU-----------AGGCGGc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 966 | 0.69 | 0.452506 |
Target: 5'- uCGAGCCACGUGUCGagccaGCccuucaCCGUCGc -3' miRNA: 3'- -GUUUGGUGCACAGCg----CGcua---GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 17399 | 0.69 | 0.436782 |
Target: 5'- cCGGGCCAgCG-GUCGCGCGugcucaugacauucaAcCCGCCGa -3' miRNA: 3'- -GUUUGGU-GCaCAGCGCGC---------------UaGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 19490 | 0.7 | 0.423284 |
Target: 5'- --uACCGC-UGUCGcCGUGGgcgCCGCCGu -3' miRNA: 3'- guuUGGUGcACAGC-GCGCUa--GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 13916 | 0.7 | 0.394308 |
Target: 5'- uGAACgACGUGgcgCGCcgcgcugGCGAggCCGCCGg -3' miRNA: 3'- gUUUGgUGCACa--GCG-------CGCUa-GGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 19142 | 0.71 | 0.334608 |
Target: 5'- cCAcGCCgGCGUGUaCGCGCGAaccaUCCGCa- -3' miRNA: 3'- -GUuUGG-UGCACA-GCGCGCU----AGGCGgc -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 41437 | 0.74 | 0.247164 |
Target: 5'- gAGACUAUGUGggGCGUGA-CCGCCGc -3' miRNA: 3'- gUUUGGUGCACagCGCGCUaGGCGGC- -5' |
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26761 | 5' | -55.8 | NC_005808.1 | + | 25770 | 0.66 | 0.633859 |
Target: 5'- cCGAACUAUGcGcCGCGUGAacugcgCCGCCu -3' miRNA: 3'- -GUUUGGUGCaCaGCGCGCUa-----GGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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