miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26764 3' -57.3 NC_005808.1 + 965 0.66 0.536231
Target:  5'- gCCCAcGGCagcuugcagccaCUUGGCCGccuGGCGGUGc -3'
miRNA:   3'- gGGGU-CCGa-----------GAACCGGCu--CCGUUACu -5'
26764 3' -57.3 NC_005808.1 + 15716 0.66 0.495972
Target:  5'- gCCUGGGCaUCgaacUGGCgCGAGGCcAUGc -3'
miRNA:   3'- gGGGUCCG-AGa---ACCG-GCUCCGuUACu -5'
26764 3' -57.3 NC_005808.1 + 19879 0.67 0.485602
Target:  5'- gCCgaAGGCgucgcgcgccuUCUUGGCCGuGGCAAg-- -3'
miRNA:   3'- gGGg-UCCG-----------AGAACCGGCuCCGUUacu -5'
26764 3' -57.3 NC_005808.1 + 21795 0.67 0.485602
Target:  5'- gUCCuGGUUCUUGGCgGAcaccGGCAGUu- -3'
miRNA:   3'- gGGGuCCGAGAACCGgCU----CCGUUAcu -5'
26764 3' -57.3 NC_005808.1 + 2243 0.67 0.485602
Target:  5'- aCgCCGGGC-CUUGGCC--GGCAGUu- -3'
miRNA:   3'- -GgGGUCCGaGAACCGGcuCCGUUAcu -5'
26764 3' -57.3 NC_005808.1 + 29622 0.67 0.455138
Target:  5'- gCgCCGGGCgCUugUGGCCG-GGCuuGAUGGg -3'
miRNA:   3'- -GgGGUCCGaGA--ACCGGCuCCG--UUACU- -5'
26764 3' -57.3 NC_005808.1 + 6340 0.68 0.406775
Target:  5'- gCCCCAgccaaagcgcccGGCcCgaaGGCCGGGGCGcUGGg -3'
miRNA:   3'- -GGGGU------------CCGaGaa-CCGGCUCCGUuACU- -5'
26764 3' -57.3 NC_005808.1 + 30091 0.68 0.388352
Target:  5'- gCCCGGGCgccacGGCCcuugucccAGGCGAUGAg -3'
miRNA:   3'- gGGGUCCGagaa-CCGGc-------UCCGUUACU- -5'
26764 3' -57.3 NC_005808.1 + 4590 0.68 0.388352
Target:  5'- gCgCCAGGCgaggaacugCUcGGCCucGGCGAUGAu -3'
miRNA:   3'- -GgGGUCCGa--------GAaCCGGcuCCGUUACU- -5'
26764 3' -57.3 NC_005808.1 + 19360 0.68 0.388352
Target:  5'- uCCCCagcgAGGCgcggUCggUGGCCGAGGCc--GAg -3'
miRNA:   3'- -GGGG----UCCG----AGa-ACCGGCUCCGuuaCU- -5'
26764 3' -57.3 NC_005808.1 + 36262 0.69 0.353189
Target:  5'- -gCCGGGCgcuUUGGCUGGGGCGGa-- -3'
miRNA:   3'- ggGGUCCGag-AACCGGCUCCGUUacu -5'
26764 3' -57.3 NC_005808.1 + 41873 0.7 0.320339
Target:  5'- uCCgCCAGGCgcucgaCUUGGCCGuGGCc---- -3'
miRNA:   3'- -GG-GGUCCGa-----GAACCGGCuCCGuuacu -5'
26764 3' -57.3 NC_005808.1 + 7770 0.72 0.229607
Target:  5'- aUCCAGGCUCgc-GCCuucgcccugcGAGGCGAUGGg -3'
miRNA:   3'- gGGGUCCGAGaacCGG----------CUCCGUUACU- -5'
26764 3' -57.3 NC_005808.1 + 31017 0.77 0.100123
Target:  5'- gUCCaCGGGCUUgccGGCCGAGGCAAUc- -3'
miRNA:   3'- -GGG-GUCCGAGaa-CCGGCUCCGUUAcu -5'
26764 3' -57.3 NC_005808.1 + 27254 1.1 0.000331
Target:  5'- gCCCCAGGCUCUUGGCCGAGGCAAUGAa -3'
miRNA:   3'- -GGGGUCCGAGAACCGGCUCCGUUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.