Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26765 | 3' | -54.1 | NC_005808.1 | + | 29047 | 0.67 | 0.679213 |
Target: 5'- uCGCCGUGGGC--ACCGagucagGCgGCCg -3' miRNA: 3'- cGUGGCACCUGaaUGGCaa----CGaCGGg -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 35518 | 0.67 | 0.669155 |
Target: 5'- cGCGCCGUGGGuagGCCGcgGCgucaugaaguaccugGCCg -3' miRNA: 3'- -CGUGGCACCUgaaUGGCaaCGa--------------CGGg -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 6295 | 0.67 | 0.656824 |
Target: 5'- gGCGCCG-GGGCUUAucuCCGgUGCgUGCa- -3' miRNA: 3'- -CGUGGCaCCUGAAU---GGCaACG-ACGgg -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 14792 | 0.67 | 0.634339 |
Target: 5'- cGCGCgCGaGGACgUGCUGcgGCUGCgCg -3' miRNA: 3'- -CGUG-GCaCCUGaAUGGCaaCGACGgG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 33824 | 0.67 | 0.634339 |
Target: 5'- cCAUCGUGc----GCCGcgUGCUGCCCg -3' miRNA: 3'- cGUGGCACcugaaUGGCa-ACGACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 28968 | 0.68 | 0.623088 |
Target: 5'- cGCGCC--GGACUugcugccgcUACCGaUGCUGUCg -3' miRNA: 3'- -CGUGGcaCCUGA---------AUGGCaACGACGGg -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 8686 | 0.68 | 0.578267 |
Target: 5'- uGCGCCGcccaGGugUgcGCCGcgcagaUUGCUGCCg -3' miRNA: 3'- -CGUGGCa---CCugAa-UGGC------AACGACGGg -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 35395 | 0.68 | 0.567155 |
Target: 5'- uGCuGCCGUGGAC--AUCGc-GCUGUCCc -3' miRNA: 3'- -CG-UGGCACCUGaaUGGCaaCGACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 19498 | 0.68 | 0.567155 |
Target: 5'- uCGCCGUGGGCgccGCCGUUGgC-GUCg -3' miRNA: 3'- cGUGGCACCUGaa-UGGCAAC-GaCGGg -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 17526 | 0.69 | 0.545104 |
Target: 5'- cGCugCGcUGGG--UGgCGaUGCUGCCCg -3' miRNA: 3'- -CGugGC-ACCUgaAUgGCaACGACGGG- -5' |
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26765 | 3' | -54.1 | NC_005808.1 | + | 27073 | 0.66 | 0.723334 |
Target: 5'- gGCACCGUGca--UAUCGgc-CUGCCCa -3' miRNA: 3'- -CGUGGCACcugaAUGGCaacGACGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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