miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26765 3' -54.1 NC_005808.1 + 624 0.74 0.269972
Target:  5'- aGCGCCGUGGACacggcguCCGgcGUcgagucggUGCCCa -3'
miRNA:   3'- -CGUGGCACCUGaau----GGCaaCG--------ACGGG- -5'
26765 3' -54.1 NC_005808.1 + 1707 0.69 0.512579
Target:  5'- uCGCCGUGGGCcggcgUGCCGgcgaggGC-GUCCa -3'
miRNA:   3'- cGUGGCACCUGa----AUGGCaa----CGaCGGG- -5'
26765 3' -54.1 NC_005808.1 + 3870 0.66 0.734158
Target:  5'- gGCGCCGUc-GCUguagGCCGc-GCUGCCg -3'
miRNA:   3'- -CGUGGCAccUGAa---UGGCaaCGACGGg -5'
26765 3' -54.1 NC_005808.1 + 4098 0.75 0.265782
Target:  5'- uGCGCCGUGGugUUuccGCCagccugcgcugcagcGUUGCUuCCCg -3'
miRNA:   3'- -CGUGGCACCugAA---UGG---------------CAACGAcGGG- -5'
26765 3' -54.1 NC_005808.1 + 5474 0.66 0.720068
Target:  5'- gGCGgCGaGGugUUGCCGaUgggggguacggcgaUGCUGCCa -3'
miRNA:   3'- -CGUgGCaCCugAAUGGC-A--------------ACGACGGg -5'
26765 3' -54.1 NC_005808.1 + 6295 0.67 0.656824
Target:  5'- gGCGCCG-GGGCUUAucuCCGgUGCgUGCa- -3'
miRNA:   3'- -CGUGGCaCCUGAAU---GGCaACG-ACGgg -5'
26765 3' -54.1 NC_005808.1 + 8686 0.68 0.578267
Target:  5'- uGCGCCGcccaGGugUgcGCCGcgcagaUUGCUGCCg -3'
miRNA:   3'- -CGUGGCa---CCugAa-UGGC------AACGACGGg -5'
26765 3' -54.1 NC_005808.1 + 12067 0.68 0.567155
Target:  5'- gGCGCCGaUGGugUccUGCCGUUucGCUuCCUu -3'
miRNA:   3'- -CGUGGC-ACCugA--AUGGCAA--CGAcGGG- -5'
26765 3' -54.1 NC_005808.1 + 13941 0.68 0.589425
Target:  5'- aGCGCCGUGGACUgga------UGCCCu -3'
miRNA:   3'- -CGUGGCACCUGAauggcaacgACGGG- -5'
26765 3' -54.1 NC_005808.1 + 14792 0.67 0.634339
Target:  5'- cGCGCgCGaGGACgUGCUGcgGCUGCgCg -3'
miRNA:   3'- -CGUG-GCaCCUGaAUGGCaaCGACGgG- -5'
26765 3' -54.1 NC_005808.1 + 15155 0.66 0.734158
Target:  5'- uGCGCCcaGGGCgacgGCUGaUGUUGCUCc -3'
miRNA:   3'- -CGUGGcaCCUGaa--UGGCaACGACGGG- -5'
26765 3' -54.1 NC_005808.1 + 17526 0.69 0.545104
Target:  5'- cGCugCGcUGGG--UGgCGaUGCUGCCCg -3'
miRNA:   3'- -CGugGC-ACCUgaAUgGCaACGACGGG- -5'
26765 3' -54.1 NC_005808.1 + 17905 0.66 0.723334
Target:  5'- gGCACCGaUGGACa-GCCuggGCguggacgugGCCCg -3'
miRNA:   3'- -CGUGGC-ACCUGaaUGGcaaCGa--------CGGG- -5'
26765 3' -54.1 NC_005808.1 + 19151 0.68 0.567155
Target:  5'- aCACCGUcagccagauGGAUgcGuuGUcGCUGCCCg -3'
miRNA:   3'- cGUGGCA---------CCUGaaUggCAaCGACGGG- -5'
26765 3' -54.1 NC_005808.1 + 19498 0.68 0.567155
Target:  5'- uCGCCGUGGGCgccGCCGUUGgC-GUCg -3'
miRNA:   3'- cGUGGCACCUGaa-UGGCAAC-GaCGGg -5'
26765 3' -54.1 NC_005808.1 + 19725 0.81 0.101381
Target:  5'- gGCGCCGcgcaucgcccugcuUGGGCUgguUGCCGUUGUUGCCg -3'
miRNA:   3'- -CGUGGC--------------ACCUGA---AUGGCAACGACGGg -5'
26765 3' -54.1 NC_005808.1 + 22750 0.67 0.645588
Target:  5'- aGCAgaGUGGACUUGCCcaggGUgaggGCCg -3'
miRNA:   3'- -CGUggCACCUGAAUGGcaa-CGa---CGGg -5'
26765 3' -54.1 NC_005808.1 + 27073 0.66 0.723334
Target:  5'- gGCACCGUGca--UAUCGgc-CUGCCCa -3'
miRNA:   3'- -CGUGGCACcugaAUGGCaacGACGGG- -5'
26765 3' -54.1 NC_005808.1 + 27925 1.02 0.0031
Target:  5'- aGCACCGUGGACUUACCGUU-CUGCCCg -3'
miRNA:   3'- -CGUGGCACCUGAAUGGCAAcGACGGG- -5'
26765 3' -54.1 NC_005808.1 + 28824 0.82 0.089465
Target:  5'- cGCGCCGUcgucggguugcggccGGACUUGCCGaaGCUGUCCc -3'
miRNA:   3'- -CGUGGCA---------------CCUGAAUGGCaaCGACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.