miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26765 3' -54.1 NC_005808.1 + 35395 0.68 0.567155
Target:  5'- uGCuGCCGUGGAC--AUCGc-GCUGUCCc -3'
miRNA:   3'- -CG-UGGCACCUGaaUGGCaaCGACGGG- -5'
26765 3' -54.1 NC_005808.1 + 19151 0.68 0.567155
Target:  5'- aCACCGUcagccagauGGAUgcGuuGUcGCUGCCCg -3'
miRNA:   3'- cGUGGCA---------CCUGaaUggCAaCGACGGG- -5'
26765 3' -54.1 NC_005808.1 + 19498 0.68 0.567155
Target:  5'- uCGCCGUGGGCgccGCCGUUGgC-GUCg -3'
miRNA:   3'- cGUGGCACCUGaa-UGGCAAC-GaCGGg -5'
26765 3' -54.1 NC_005808.1 + 17526 0.69 0.545104
Target:  5'- cGCugCGcUGGG--UGgCGaUGCUGCCCg -3'
miRNA:   3'- -CGugGC-ACCUgaAUgGCaACGACGGG- -5'
26765 3' -54.1 NC_005808.1 + 1707 0.69 0.512579
Target:  5'- uCGCCGUGGGCcggcgUGCCGgcgaggGC-GUCCa -3'
miRNA:   3'- cGUGGCACCUGa----AUGGCaa----CGaCGGG- -5'
26765 3' -54.1 NC_005808.1 + 40226 0.7 0.491345
Target:  5'- -uGCCGUGcGcCUcgaACCGUUGCcguuUGCCCa -3'
miRNA:   3'- cgUGGCAC-CuGAa--UGGCAACG----ACGGG- -5'
26765 3' -54.1 NC_005808.1 + 624 0.74 0.269972
Target:  5'- aGCGCCGUGGACacggcguCCGgcGUcgagucggUGCCCa -3'
miRNA:   3'- -CGUGGCACCUGaau----GGCaaCG--------ACGGG- -5'
26765 3' -54.1 NC_005808.1 + 4098 0.75 0.265782
Target:  5'- uGCGCCGUGGugUUuccGCCagccugcgcugcagcGUUGCUuCCCg -3'
miRNA:   3'- -CGUGGCACCugAA---UGG---------------CAACGAcGGG- -5'
26765 3' -54.1 NC_005808.1 + 19725 0.81 0.101381
Target:  5'- gGCGCCGcgcaucgcccugcuUGGGCUgguUGCCGUUGUUGCCg -3'
miRNA:   3'- -CGUGGC--------------ACCUGA---AUGGCAACGACGGg -5'
26765 3' -54.1 NC_005808.1 + 28824 0.82 0.089465
Target:  5'- cGCGCCGUcgucggguugcggccGGACUUGCCGaaGCUGUCCc -3'
miRNA:   3'- -CGUGGCA---------------CCUGAAUGGCaaCGACGGG- -5'
26765 3' -54.1 NC_005808.1 + 27925 1.02 0.0031
Target:  5'- aGCACCGUGGACUUACCGUU-CUGCCCg -3'
miRNA:   3'- -CGUGGCACCUGAAUGGCAAcGACGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.