miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26766 3' -54.2 NC_005808.1 + 18042 0.66 0.682207
Target:  5'- cGGcCUCGCCAUcGccGCGCugCGcGACc -3'
miRNA:   3'- uCC-GAGUGGUA-CaaCGCGugGUaCUG- -5'
26766 3' -54.2 NC_005808.1 + 37207 0.66 0.670814
Target:  5'- aGGuGCUCGCgGc---GCGCACCAgUGACa -3'
miRNA:   3'- -UC-CGAGUGgUacaaCGCGUGGU-ACUG- -5'
26766 3' -54.2 NC_005808.1 + 1691 0.66 0.65938
Target:  5'- cAGGUagucgagaaauUCGCCGUGggccgGCGUGCCGgcgagGGCg -3'
miRNA:   3'- -UCCG-----------AGUGGUACaa---CGCGUGGUa----CUG- -5'
26766 3' -54.2 NC_005808.1 + 26281 0.66 0.647919
Target:  5'- cGGCUCGCgCAUc--GCGCGCgAUGGa -3'
miRNA:   3'- uCCGAGUG-GUAcaaCGCGUGgUACUg -5'
26766 3' -54.2 NC_005808.1 + 37096 0.66 0.647919
Target:  5'- aAGGC--ACCGaGUUG-GCGCUAUGGCa -3'
miRNA:   3'- -UCCGagUGGUaCAACgCGUGGUACUG- -5'
26766 3' -54.2 NC_005808.1 + 2100 0.66 0.635295
Target:  5'- cAGGUggUCGCCGUGUcgucgguauagauUGCGC-CguUGGCg -3'
miRNA:   3'- -UCCG--AGUGGUACA-------------ACGCGuGguACUG- -5'
26766 3' -54.2 NC_005808.1 + 36250 0.66 0.624962
Target:  5'- cGGUUCGCCAcccaGaCGCACCAgGGCg -3'
miRNA:   3'- uCCGAGUGGUacaaC-GCGUGGUaCUG- -5'
26766 3' -54.2 NC_005808.1 + 2093 0.66 0.624962
Target:  5'- ---gUCGuCCAUGUaGCGCGCCcaAUGACg -3'
miRNA:   3'- uccgAGU-GGUACAaCGCGUGG--UACUG- -5'
26766 3' -54.2 NC_005808.1 + 8036 0.66 0.624962
Target:  5'- aGGGC-CGCCGUccUUGcCGCcguCCAUGACg -3'
miRNA:   3'- -UCCGaGUGGUAc-AAC-GCGu--GGUACUG- -5'
26766 3' -54.2 NC_005808.1 + 28675 0.67 0.613488
Target:  5'- cGGcCUCGCCAgcgcgGCGCGCCAcGuCg -3'
miRNA:   3'- uCC-GAGUGGUacaa-CGCGUGGUaCuG- -5'
26766 3' -54.2 NC_005808.1 + 9573 0.67 0.613488
Target:  5'- uGGCgagCAUCcgGUcgaacacguUGCGCACCucgGGCg -3'
miRNA:   3'- uCCGa--GUGGuaCA---------ACGCGUGGua-CUG- -5'
26766 3' -54.2 NC_005808.1 + 1869 0.67 0.613488
Target:  5'- cAGGUUCAgcCCGUGgccgGCGCugGCCGggugGGCg -3'
miRNA:   3'- -UCCGAGU--GGUACaa--CGCG--UGGUa---CUG- -5'
26766 3' -54.2 NC_005808.1 + 29910 0.67 0.579213
Target:  5'- cAGGCcgUACCA-GUUcGCGCaucaguGCCGUGGCu -3'
miRNA:   3'- -UCCGa-GUGGUaCAA-CGCG------UGGUACUG- -5'
26766 3' -54.2 NC_005808.1 + 35871 0.67 0.579213
Target:  5'- aAGGCcgaCGCCGUGcucaagcagaUGCGCGCCcagGACa -3'
miRNA:   3'- -UCCGa--GUGGUACa---------ACGCGUGGua-CUG- -5'
26766 3' -54.2 NC_005808.1 + 5337 0.68 0.545364
Target:  5'- uGGCgCAgCAUGgcaucGCGCugCGUGGCc -3'
miRNA:   3'- uCCGaGUgGUACaa---CGCGugGUACUG- -5'
26766 3' -54.2 NC_005808.1 + 26819 0.68 0.545364
Target:  5'- cGGCUCuauGCCGUcGUgcguCGCACCAUuGGCg -3'
miRNA:   3'- uCCGAG---UGGUA-CAac--GCGUGGUA-CUG- -5'
26766 3' -54.2 NC_005808.1 + 42397 0.69 0.479854
Target:  5'- -aGUUCGCCGUGUcGCccgGCAgCGUGACg -3'
miRNA:   3'- ucCGAGUGGUACAaCG---CGUgGUACUG- -5'
26766 3' -54.2 NC_005808.1 + 16064 0.69 0.458868
Target:  5'- aGGGCggCGCCAUGcUGaaaACCGUGGCg -3'
miRNA:   3'- -UCCGa-GUGGUACaACgcgUGGUACUG- -5'
26766 3' -54.2 NC_005808.1 + 14415 0.71 0.389561
Target:  5'- uGGGCgUCGCCAg---GCGCGCCugcGGCa -3'
miRNA:   3'- -UCCG-AGUGGUacaaCGCGUGGua-CUG- -5'
26766 3' -54.2 NC_005808.1 + 28256 1.09 0.000772
Target:  5'- cAGGCUCACCAUGUUGCGCACCAUGACc -3'
miRNA:   3'- -UCCGAGUGGUACAACGCGUGGUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.