miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26768 3' -64.4 NC_005808.1 + 692 0.66 0.218264
Target:  5'- gGCGCCGGccgGGCC--GCCCaagauaccGCCCa- -3'
miRNA:   3'- -CGCGGCCa--CCGGaaCGGGgu------CGGGag -5'
26768 3' -64.4 NC_005808.1 + 5353 0.69 0.128855
Target:  5'- cGCGCUGcGUGGCCgccUGCaCCGcGCCCa- -3'
miRNA:   3'- -CGCGGC-CACCGGa--ACGgGGU-CGGGag -5'
26768 3' -64.4 NC_005808.1 + 5691 0.67 0.191869
Target:  5'- uUGCCGGccuuguccuUGGCCUUGUCggUCGGCaCCUUg -3'
miRNA:   3'- cGCGGCC---------ACCGGAACGG--GGUCG-GGAG- -5'
26768 3' -64.4 NC_005808.1 + 7423 0.67 0.198964
Target:  5'- gGCaCCGGaUGGCCggccagcaguucgGCUUCGGCCUUCg -3'
miRNA:   3'- -CGcGGCC-ACCGGaa-----------CGGGGUCGGGAG- -5'
26768 3' -64.4 NC_005808.1 + 7627 0.68 0.163928
Target:  5'- aGCGCCGGacacgUGGCCUUGgCCUuGCagaaUCg -3'
miRNA:   3'- -CGCGGCC-----ACCGGAACgGGGuCGgg--AG- -5'
26768 3' -64.4 NC_005808.1 + 8461 0.72 0.080842
Target:  5'- gGCGUCgaGGUGGCCUgcgaUGCCgCAGCCgaCg -3'
miRNA:   3'- -CGCGG--CCACCGGA----ACGGgGUCGGgaG- -5'
26768 3' -64.4 NC_005808.1 + 8620 0.67 0.181644
Target:  5'- uGCGCuucucggccgcugCGGUGGCgagGUCgCCGGCCUUCa -3'
miRNA:   3'- -CGCG-------------GCCACCGgaaCGG-GGUCGGGAG- -5'
26768 3' -64.4 NC_005808.1 + 8970 0.67 0.186938
Target:  5'- cGUGCCGGauucgcagcggUGGCCgUGCCgCCAGCg--- -3'
miRNA:   3'- -CGCGGCC-----------ACCGGaACGG-GGUCGggag -5'
26768 3' -64.4 NC_005808.1 + 10008 0.67 0.202075
Target:  5'- aGUGCCGcgcGCCcgGCCCCcGCCCUg -3'
miRNA:   3'- -CGCGGCcacCGGaaCGGGGuCGGGAg -5'
26768 3' -64.4 NC_005808.1 + 11377 0.68 0.159642
Target:  5'- cGCGCCGG-GGuUCUucaUGCUUUcGCCCUCg -3'
miRNA:   3'- -CGCGGCCaCC-GGA---ACGGGGuCGGGAG- -5'
26768 3' -64.4 NC_005808.1 + 11559 0.66 0.212203
Target:  5'- cGCGCaCGuUGGCCcgcgcgaUUGCCUCGGCCg-- -3'
miRNA:   3'- -CGCG-GCcACCGG-------AACGGGGUCGGgag -5'
26768 3' -64.4 NC_005808.1 + 15099 0.69 0.128855
Target:  5'- -aGCUGGcGGCCgagGCCgCCGGCauCCUCg -3'
miRNA:   3'- cgCGGCCaCCGGaa-CGG-GGUCG--GGAG- -5'
26768 3' -64.4 NC_005808.1 + 16337 0.68 0.155458
Target:  5'- -aGCCGaccaGGCCggcgggUGCCCguGCCUUCg -3'
miRNA:   3'- cgCGGCca--CCGGa-----ACGGGguCGGGAG- -5'
26768 3' -64.4 NC_005808.1 + 16518 0.7 0.118794
Target:  5'- gGUGCCGGUGGUCUgGCCgauaUAGCCgUa -3'
miRNA:   3'- -CGCGGCCACCGGAaCGGg---GUCGGgAg -5'
26768 3' -64.4 NC_005808.1 + 17292 0.71 0.095436
Target:  5'- aGCGCCGGUGGCagggccgGCCgCAcGaCCUCa -3'
miRNA:   3'- -CGCGGCCACCGgaa----CGGgGU-CgGGAG- -5'
26768 3' -64.4 NC_005808.1 + 18417 0.66 0.235549
Target:  5'- gGCGaaGGUGGCgUUGUCCgCcgAGUCCUg -3'
miRNA:   3'- -CGCggCCACCGgAACGGG-G--UCGGGAg -5'
26768 3' -64.4 NC_005808.1 + 19372 0.66 0.207352
Target:  5'- cGCgGUCGGUGGCCgagGCCgaGGCCg-- -3'
miRNA:   3'- -CG-CGGCCACCGGaa-CGGggUCGGgag -5'
26768 3' -64.4 NC_005808.1 + 22675 0.67 0.177411
Target:  5'- cGCGCuCGGUGcGCagUUGcCCCCAGCgCg- -3'
miRNA:   3'- -CGCG-GCCAC-CGg-AAC-GGGGUCGgGag -5'
26768 3' -64.4 NC_005808.1 + 22717 0.67 0.186939
Target:  5'- uGCGCuCGGUuugcucGGCCacguuaUUGCCCCAGCagaguggaCUUg -3'
miRNA:   3'- -CGCG-GCCA------CCGG------AACGGGGUCGg-------GAG- -5'
26768 3' -64.4 NC_005808.1 + 23211 0.67 0.196914
Target:  5'- uCGUCGGUgaauucGGCCUcgGCCUCGGCCa-- -3'
miRNA:   3'- cGCGGCCA------CCGGAa-CGGGGUCGGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.