miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26768 3' -64.4 NC_005808.1 + 24140 0.67 0.182119
Target:  5'- -aGCCGGcUGcgcGCC-UGgCCCAGCgCCUCg -3'
miRNA:   3'- cgCGGCC-AC---CGGaACgGGGUCG-GGAG- -5'
26768 3' -64.4 NC_005808.1 + 24551 0.68 0.155458
Target:  5'- cGCGCCGGUaaGGCC---CCCaagCAGCCCg- -3'
miRNA:   3'- -CGCGGCCA--CCGGaacGGG---GUCGGGag -5'
26768 3' -64.4 NC_005808.1 + 25304 0.67 0.196914
Target:  5'- cGUGCgGccGGCCcUGCCaCCGGCgCUCg -3'
miRNA:   3'- -CGCGgCcaCCGGaACGG-GGUCGgGAG- -5'
26768 3' -64.4 NC_005808.1 + 27435 0.71 0.100832
Target:  5'- cGCGcCCGGcGGCCgcagGCCCUGGCgCUg -3'
miRNA:   3'- -CGC-GGCCaCCGGaa--CGGGGUCGgGAg -5'
26768 3' -64.4 NC_005808.1 + 27499 0.74 0.054641
Target:  5'- aUGCCGGcGGCCUcgGCCgCCAGCUuCUCg -3'
miRNA:   3'- cGCGGCCaCCGGAa-CGG-GGUCGG-GAG- -5'
26768 3' -64.4 NC_005808.1 + 28155 0.68 0.174638
Target:  5'- uUGCCGGUGGUCagaucgaccacgccgUUGCCCaC-GCCCa- -3'
miRNA:   3'- cGCGGCCACCGG---------------AACGGG-GuCGGGag -5'
26768 3' -64.4 NC_005808.1 + 29362 1.11 0.00006
Target:  5'- cGCGCCGGUGGCCUUGCCCCAGCCCUCg -3'
miRNA:   3'- -CGCGGCCACCGGAACGGGGUCGGGAG- -5'
26768 3' -64.4 NC_005808.1 + 31628 0.71 0.098099
Target:  5'- -gGCCgaacaGGUGGCCgcagUGuCCCCGGCUgUCg -3'
miRNA:   3'- cgCGG-----CCACCGGa---AC-GGGGUCGGgAG- -5'
26768 3' -64.4 NC_005808.1 + 36215 0.7 0.106224
Target:  5'- gGCGCCGcGgcGGCCgaccUgguguaacccagcGCCCCGGCCUUCg -3'
miRNA:   3'- -CGCGGC-Ca-CCGGa---A-------------CGGGGUCGGGAG- -5'
26768 3' -64.4 NC_005808.1 + 39768 0.7 0.115606
Target:  5'- gGCGCCGcugcgcGUGGCCgcgaGCaCCUGGCCCg- -3'
miRNA:   3'- -CGCGGC------CACCGGaa--CG-GGGUCGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.