Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26768 | 3' | -64.4 | NC_005808.1 | + | 11377 | 0.68 | 0.159642 |
Target: 5'- cGCGCCGG-GGuUCUucaUGCUUUcGCCCUCg -3' miRNA: 3'- -CGCGGCCaCC-GGA---ACGGGGuCGGGAG- -5' |
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26768 | 3' | -64.4 | NC_005808.1 | + | 10008 | 0.67 | 0.202075 |
Target: 5'- aGUGCCGcgcGCCcgGCCCCcGCCCUg -3' miRNA: 3'- -CGCGGCcacCGGaaCGGGGuCGGGAg -5' |
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26768 | 3' | -64.4 | NC_005808.1 | + | 8970 | 0.67 | 0.186938 |
Target: 5'- cGUGCCGGauucgcagcggUGGCCgUGCCgCCAGCg--- -3' miRNA: 3'- -CGCGGCC-----------ACCGGaACGG-GGUCGggag -5' |
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26768 | 3' | -64.4 | NC_005808.1 | + | 8620 | 0.67 | 0.181644 |
Target: 5'- uGCGCuucucggccgcugCGGUGGCgagGUCgCCGGCCUUCa -3' miRNA: 3'- -CGCG-------------GCCACCGgaaCGG-GGUCGGGAG- -5' |
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26768 | 3' | -64.4 | NC_005808.1 | + | 8461 | 0.72 | 0.080842 |
Target: 5'- gGCGUCgaGGUGGCCUgcgaUGCCgCAGCCgaCg -3' miRNA: 3'- -CGCGG--CCACCGGA----ACGGgGUCGGgaG- -5' |
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26768 | 3' | -64.4 | NC_005808.1 | + | 7627 | 0.68 | 0.163928 |
Target: 5'- aGCGCCGGacacgUGGCCUUGgCCUuGCagaaUCg -3' miRNA: 3'- -CGCGGCC-----ACCGGAACgGGGuCGgg--AG- -5' |
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26768 | 3' | -64.4 | NC_005808.1 | + | 7423 | 0.67 | 0.198964 |
Target: 5'- gGCaCCGGaUGGCCggccagcaguucgGCUUCGGCCUUCg -3' miRNA: 3'- -CGcGGCC-ACCGGaa-----------CGGGGUCGGGAG- -5' |
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26768 | 3' | -64.4 | NC_005808.1 | + | 5691 | 0.67 | 0.191869 |
Target: 5'- uUGCCGGccuuguccuUGGCCUUGUCggUCGGCaCCUUg -3' miRNA: 3'- cGCGGCC---------ACCGGAACGG--GGUCG-GGAG- -5' |
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26768 | 3' | -64.4 | NC_005808.1 | + | 5353 | 0.69 | 0.128855 |
Target: 5'- cGCGCUGcGUGGCCgccUGCaCCGcGCCCa- -3' miRNA: 3'- -CGCGGC-CACCGGa--ACGgGGU-CGGGag -5' |
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26768 | 3' | -64.4 | NC_005808.1 | + | 692 | 0.66 | 0.218264 |
Target: 5'- gGCGCCGGccgGGCC--GCCCaagauaccGCCCa- -3' miRNA: 3'- -CGCGGCCa--CCGGaaCGGGgu------CGGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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