miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26768 5' -55.5 NC_005808.1 + 18031 0.66 0.623088
Target:  5'- gGGUucuuGUCGGCGGGcugCUUGGGgGCc -3'
miRNA:   3'- gCCAuc--CGGUCGUCUua-GAACCCgCG- -5'
26768 5' -55.5 NC_005808.1 + 9387 0.66 0.621963
Target:  5'- gCGGUGGccgugccgcgauaGCCAGCGGuggccgugcCgaGGGCGCc -3'
miRNA:   3'- -GCCAUC-------------CGGUCGUCuua------GaaCCCGCG- -5'
26768 5' -55.5 NC_005808.1 + 5526 0.67 0.578267
Target:  5'- uGGUaguuccAGGCCGGCAGcuUCU-GGucaaucacGCGCa -3'
miRNA:   3'- gCCA------UCCGGUCGUCuuAGAaCC--------CGCG- -5'
26768 5' -55.5 NC_005808.1 + 33864 0.67 0.578267
Target:  5'- aCGGUagcgccgcgcccgccGGGCacaucuucguguuCGGCAGcAAUCUgcgcggcgcacaccUGGGCGCg -3'
miRNA:   3'- -GCCA---------------UCCG-------------GUCGUC-UUAGA--------------ACCCGCG- -5'
26768 5' -55.5 NC_005808.1 + 1711 0.67 0.578267
Target:  5'- -cGUGGGCCGGCGugccggCgaGGGCGUc -3'
miRNA:   3'- gcCAUCCGGUCGUcuua--GaaCCCGCG- -5'
26768 5' -55.5 NC_005808.1 + 6506 0.67 0.567155
Target:  5'- uGGUuGGCgAGCAGuuUCUU-GGCGa -3'
miRNA:   3'- gCCAuCCGgUCGUCuuAGAAcCCGCg -5'
26768 5' -55.5 NC_005808.1 + 4803 0.67 0.556098
Target:  5'- gGcGUAGGCCAGCuuguAGAGgucgGGGCcgGCg -3'
miRNA:   3'- gC-CAUCCGGUCG----UCUUagaaCCCG--CG- -5'
26768 5' -55.5 NC_005808.1 + 39673 0.67 0.556098
Target:  5'- gCGGUguGGGCCGGCaugGGAA---UGGGCa- -3'
miRNA:   3'- -GCCA--UCCGGUCG---UCUUagaACCCGcg -5'
26768 5' -55.5 NC_005808.1 + 27691 0.67 0.545104
Target:  5'- aGGccGGCCAGCAGcaGAUCgcc-GCGCa -3'
miRNA:   3'- gCCauCCGGUCGUC--UUAGaaccCGCG- -5'
26768 5' -55.5 NC_005808.1 + 13438 0.67 0.534182
Target:  5'- aCGGcAGGCCcgccagcuuGGCGGc--CUcGGGCGCg -3'
miRNA:   3'- -GCCaUCCGG---------UCGUCuuaGAaCCCGCG- -5'
26768 5' -55.5 NC_005808.1 + 5803 0.68 0.512579
Target:  5'- gCGGcAGcGCCAGCGGAuaGUCgggcaUGGcGUGCc -3'
miRNA:   3'- -GCCaUC-CGGUCGUCU--UAGa----ACC-CGCG- -5'
26768 5' -55.5 NC_005808.1 + 33170 0.68 0.512579
Target:  5'- uGGUGGaGUU-GCGGAAg--UGGGCGCc -3'
miRNA:   3'- gCCAUC-CGGuCGUCUUagaACCCGCG- -5'
26768 5' -55.5 NC_005808.1 + 41879 0.68 0.480882
Target:  5'- uCGGcaaaGCCgccccuauccugGGCGGuAUCUUGGGCGCc -3'
miRNA:   3'- -GCCauc-CGG------------UCGUCuUAGAACCCGCG- -5'
26768 5' -55.5 NC_005808.1 + 41316 0.69 0.459271
Target:  5'- gCGGUguGGGCgGGCAucaccucGAAaCUUGGGgGCc -3'
miRNA:   3'- -GCCA--UCCGgUCGU-------CUUaGAACCCgCG- -5'
26768 5' -55.5 NC_005808.1 + 27640 0.69 0.449163
Target:  5'- uGGUuGGUCGGCAuGAAagCUacccaggUGGGCGCc -3'
miRNA:   3'- gCCAuCCGGUCGU-CUUa-GA-------ACCCGCG- -5'
26768 5' -55.5 NC_005808.1 + 18849 0.69 0.430303
Target:  5'- cCGGUGGcGCCGGCAuGGcgCUgcuGCGCg -3'
miRNA:   3'- -GCCAUC-CGGUCGU-CUuaGAaccCGCG- -5'
26768 5' -55.5 NC_005808.1 + 24614 0.69 0.420565
Target:  5'- gGGUAGGUCAGCGGcacGUCgaaccacauGGCGUg -3'
miRNA:   3'- gCCAUCCGGUCGUCu--UAGaac------CCGCG- -5'
26768 5' -55.5 NC_005808.1 + 21455 0.69 0.410961
Target:  5'- gCGGcgGGGgCGGCAGGAUgUUGGccucgaccauGCGCu -3'
miRNA:   3'- -GCCa-UCCgGUCGUCUUAgAACC----------CGCG- -5'
26768 5' -55.5 NC_005808.1 + 3798 0.7 0.391244
Target:  5'- aCGGUcGGgCAGCAuGAccaggcgGUCggGGGCGCc -3'
miRNA:   3'- -GCCAuCCgGUCGU-CU-------UAGaaCCCGCG- -5'
26768 5' -55.5 NC_005808.1 + 29064 0.7 0.373945
Target:  5'- -cGUAGGCCaucAGCGGGucAUCcucGGGCGCc -3'
miRNA:   3'- gcCAUCCGG---UCGUCU--UAGaa-CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.