Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26769 | 5' | -54.1 | NC_005808.1 | + | 41597 | 0.66 | 0.72514 |
Target: 5'- uCC-CGgcCAGUGGCG-CGggcaGCGGGCUGa -3' miRNA: 3'- -GGuGCa-GUUACCGCuGC----UGUCCGACa -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 41305 | 0.68 | 0.613793 |
Target: 5'- cCCugGgcgCGGcGGUGugGGCGGGCa-- -3' miRNA: 3'- -GGugCa--GUUaCCGCugCUGUCCGaca -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 38709 | 0.66 | 0.735939 |
Target: 5'- aCCAaguUCGGcGGCGACGGCAGcGCg-- -3' miRNA: 3'- -GGUgc-AGUUaCCGCUGCUGUC-CGaca -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 38202 | 0.66 | 0.703264 |
Target: 5'- gCACGcUCAAggcccgGcGCGACGGCGccuGGCUGc -3' miRNA: 3'- gGUGC-AGUUa-----C-CGCUGCUGU---CCGACa -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 36145 | 0.66 | 0.714244 |
Target: 5'- cCUGCG-CGAcGGCGACGccuucGCGGGCgGUg -3' miRNA: 3'- -GGUGCaGUUaCCGCUGC-----UGUCCGaCA- -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 34553 | 0.67 | 0.681098 |
Target: 5'- gCGCGUC-AUGGaCGGCGGCAaggacGGCg-- -3' miRNA: 3'- gGUGCAGuUACC-GCUGCUGU-----CCGaca -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 32712 | 0.75 | 0.264396 |
Target: 5'- gCCGCGUgCAAUcaGGCGAUGGaGGGCUGa -3' miRNA: 3'- -GGUGCA-GUUA--CCGCUGCUgUCCGACa -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 32614 | 0.7 | 0.503831 |
Target: 5'- cCCGCGUCAAgggccGCGACGccGCGGucGCUGUc -3' miRNA: 3'- -GGUGCAGUUac---CGCUGC--UGUC--CGACA- -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 31976 | 0.66 | 0.714244 |
Target: 5'- gCCuauuCGUCGAUGGuCGggaauuucuauGCGguGCAGGCUGc -3' miRNA: 3'- -GGu---GCAGUUACC-GC-----------UGC--UGUCCGACa -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 31365 | 0.68 | 0.591379 |
Target: 5'- gCCACGcUAGUgGGCGugGGCGGGaacGUg -3' miRNA: 3'- -GGUGCaGUUA-CCGCugCUGUCCga-CA- -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 29507 | 1.1 | 0.000923 |
Target: 5'- uCCACGUCAAUGGCGACGACAGGCUGUg -3' miRNA: 3'- -GGUGCAGUUACCGCUGCUGUCCGACA- -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 25176 | 0.67 | 0.647512 |
Target: 5'- gCCACuGcUCAagGGCGACGugGGcgccGCUGa -3' miRNA: 3'- -GGUG-C-AGUuaCCGCUGCugUC----CGACa -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 24627 | 0.7 | 0.462156 |
Target: 5'- gCACGUCGAaccacaUGGCGugcCGGCGGGCc-- -3' miRNA: 3'- gGUGCAGUU------ACCGCu--GCUGUCCGaca -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 22664 | 0.68 | 0.613793 |
Target: 5'- uCCACGgccgaCAAggaguucGGCGGCGACAaGCUGc -3' miRNA: 3'- -GGUGCa----GUUa------CCGCUGCUGUcCGACa -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 22394 | 0.67 | 0.658737 |
Target: 5'- gCCGCGggcgcugcCAAgaccgagGGCGACGACaAGGCg-- -3' miRNA: 3'- -GGUGCa-------GUUa------CCGCUGCUG-UCCGaca -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 18559 | 0.67 | 0.685549 |
Target: 5'- aUCACGUCGGUggaggccgcgcucgcGGUGACGGCcuGGCcGUc -3' miRNA: 3'- -GGUGCAGUUA---------------CCGCUGCUGu-CCGaCA- -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 17657 | 0.82 | 0.083966 |
Target: 5'- gCCACGaUCuuGAUGGCGuCGGCGGGCUGg -3' miRNA: 3'- -GGUGC-AG--UUACCGCuGCUGUCCGACa -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 16121 | 0.71 | 0.442009 |
Target: 5'- gCACGUCGGUGGCcccGACG-UAGGaCUGc -3' miRNA: 3'- gGUGCAGUUACCG---CUGCuGUCC-GACa -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 16052 | 0.67 | 0.658737 |
Target: 5'- gCACGuUCAAggagGGCGGCGcCAuGCUGa -3' miRNA: 3'- gGUGC-AGUUa---CCGCUGCuGUcCGACa -5' |
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26769 | 5' | -54.1 | NC_005808.1 | + | 15560 | 0.73 | 0.340871 |
Target: 5'- uCCAgGUCAAUGGCGccgucagugACGACGcGCUGc -3' miRNA: 3'- -GGUgCAGUUACCGC---------UGCUGUcCGACa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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