miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26769 5' -54.1 NC_005808.1 + 10846 0.67 0.656494
Target:  5'- cCCAUGUCAaugcGUcagcgcauauuuuuaGGCGugaaaaagcccgcgcGCGGCGGGCUGg -3'
miRNA:   3'- -GGUGCAGU----UA---------------CCGC---------------UGCUGUCCGACa -5'
26769 5' -54.1 NC_005808.1 + 16052 0.67 0.658737
Target:  5'- gCACGuUCAAggagGGCGGCGcCAuGCUGa -3'
miRNA:   3'- gGUGC-AGUUa---CCGCUGCuGUcCGACa -5'
26769 5' -54.1 NC_005808.1 + 22394 0.67 0.658737
Target:  5'- gCCGCGggcgcugcCAAgaccgagGGCGACGACaAGGCg-- -3'
miRNA:   3'- -GGUGCa-------GUUa------CCGCUGCUG-UCCGaca -5'
26769 5' -54.1 NC_005808.1 + 34553 0.67 0.681098
Target:  5'- gCGCGUC-AUGGaCGGCGGCAaggacGGCg-- -3'
miRNA:   3'- gGUGCAGuUACC-GCUGCUGU-----CCGaca -5'
26769 5' -54.1 NC_005808.1 + 31976 0.66 0.714244
Target:  5'- gCCuauuCGUCGAUGGuCGggaauuucuauGCGguGCAGGCUGc -3'
miRNA:   3'- -GGu---GCAGUUACC-GC-----------UGC--UGUCCGACa -5'
26769 5' -54.1 NC_005808.1 + 1089 0.66 0.72514
Target:  5'- gCGCGuacuUCAuguUGGCGGCGGUAGGCg-- -3'
miRNA:   3'- gGUGC----AGUu--ACCGCUGCUGUCCGaca -5'
26769 5' -54.1 NC_005808.1 + 25176 0.67 0.647512
Target:  5'- gCCACuGcUCAagGGCGACGugGGcgccGCUGa -3'
miRNA:   3'- -GGUG-C-AGUuaCCGCUGCugUC----CGACa -5'
26769 5' -54.1 NC_005808.1 + 41305 0.68 0.613793
Target:  5'- cCCugGgcgCGGcGGUGugGGCGGGCa-- -3'
miRNA:   3'- -GGugCa--GUUaCCGCugCUGUCCGaca -5'
26769 5' -54.1 NC_005808.1 + 22664 0.68 0.613793
Target:  5'- uCCACGgccgaCAAggaguucGGCGGCGACAaGCUGc -3'
miRNA:   3'- -GGUGCa----GUUa------CCGCUGCUGUcCGACa -5'
26769 5' -54.1 NC_005808.1 + 5427 0.68 0.602573
Target:  5'- uCCACGgcgCgGAUGGCGGCG-UGGGCgagGUc -3'
miRNA:   3'- -GGUGCa--G-UUACCGCUGCuGUCCGa--CA- -5'
26769 5' -54.1 NC_005808.1 + 2308 0.68 0.602573
Target:  5'- ---aGUCGcgGGCGuccaGCGACAGGCa-- -3'
miRNA:   3'- ggugCAGUuaCCGC----UGCUGUCCGaca -5'
26769 5' -54.1 NC_005808.1 + 31365 0.68 0.591379
Target:  5'- gCCACGcUAGUgGGCGugGGCGGGaacGUg -3'
miRNA:   3'- -GGUGCaGUUA-CCGCugCUGUCCga-CA- -5'
26769 5' -54.1 NC_005808.1 + 2959 0.68 0.580222
Target:  5'- gCACGUCGAgcacgugauCGAUGACAGGUUGc -3'
miRNA:   3'- gGUGCAGUUacc------GCUGCUGUCCGACa -5'
26769 5' -54.1 NC_005808.1 + 14987 0.7 0.503831
Target:  5'- cCCAuCGUCAagGGCGACGACcacgccaucuGGCg-- -3'
miRNA:   3'- -GGU-GCAGUuaCCGCUGCUGu---------CCGaca -5'
26769 5' -54.1 NC_005808.1 + 8555 0.81 0.105951
Target:  5'- gCCGCGcCGAUGGCGggcaGCGACAGGCg-- -3'
miRNA:   3'- -GGUGCaGUUACCGC----UGCUGUCCGaca -5'
26769 5' -54.1 NC_005808.1 + 38709 0.66 0.735939
Target:  5'- aCCAaguUCGGcGGCGACGGCAGcGCg-- -3'
miRNA:   3'- -GGUgc-AGUUaCCGCUGCUGUC-CGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.