miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2677 5' -56.7 NC_001491.2 + 42691 0.65 0.893738
Target:  5'- cGGuCGCACGCGGaaaaccuggaucacACGCCACucuggGGUG-GCa -3'
miRNA:   3'- -CC-GCGUGUGUU--------------UGCGGUG-----CCGCaCGa -5'
2677 5' -56.7 NC_001491.2 + 10139 0.66 0.889058
Target:  5'- gGGcCGCcCGCGGAgGCCugGccgcGCGUGUa -3'
miRNA:   3'- -CC-GCGuGUGUUUgCGGugC----CGCACGa -5'
2677 5' -56.7 NC_001491.2 + 144623 0.66 0.889058
Target:  5'- --gGUACACAuGCGCCugGGCcaacGCg -3'
miRNA:   3'- ccgCGUGUGUuUGCGGugCCGca--CGa -5'
2677 5' -56.7 NC_001491.2 + 112966 0.66 0.887018
Target:  5'- cGCGaacCACGAACGCCucgguaacacucccAUGGCcGUGCg -3'
miRNA:   3'- cCGCgu-GUGUUUGCGG--------------UGCCG-CACGa -5'
2677 5' -56.7 NC_001491.2 + 82217 0.66 0.884267
Target:  5'- uGCGUACAUAGAcgacguaaacaaagcCGCUGCGGCcuuuuugGUGCg -3'
miRNA:   3'- cCGCGUGUGUUU---------------GCGGUGCCG-------CACGa -5'
2677 5' -56.7 NC_001491.2 + 105111 0.66 0.882181
Target:  5'- gGGcCGC-CGCAGAUuuggccgggGCCGCGGCGgggGUc -3'
miRNA:   3'- -CC-GCGuGUGUUUG---------CGGUGCCGCa--CGa -5'
2677 5' -56.7 NC_001491.2 + 103364 0.66 0.882181
Target:  5'- uGGUGCgACACGcagcaaugaguAACGCCAUGGCa---- -3'
miRNA:   3'- -CCGCG-UGUGU-----------UUGCGGUGCCGcacga -5'
2677 5' -56.7 NC_001491.2 + 9247 0.66 0.875084
Target:  5'- aGCGC-CGCAAGCGCCAaccccccaagGGUGaGCg -3'
miRNA:   3'- cCGCGuGUGUUUGCGGUg---------CCGCaCGa -5'
2677 5' -56.7 NC_001491.2 + 25201 0.66 0.860248
Target:  5'- gGGUGCAUGCucgGGCGCUccuacuucagGCGGUGUcGCg -3'
miRNA:   3'- -CCGCGUGUGu--UUGCGG----------UGCCGCA-CGa -5'
2677 5' -56.7 NC_001491.2 + 102786 0.67 0.85252
Target:  5'- uGCGCGCuccaGCAAACauuuaGCCAUGGC-UGCc -3'
miRNA:   3'- cCGCGUG----UGUUUG-----CGGUGCCGcACGa -5'
2677 5' -56.7 NC_001491.2 + 84738 0.67 0.84379
Target:  5'- uGGCGC-CACAggUGCCAgccggggaagcccCGGgcaGUGCc -3'
miRNA:   3'- -CCGCGuGUGUuuGCGGU-------------GCCg--CACGa -5'
2677 5' -56.7 NC_001491.2 + 120156 0.67 0.836475
Target:  5'- --aGCACGCAGACGagacccaaaaCGgGGUGUGCa -3'
miRNA:   3'- ccgCGUGUGUUUGCg---------GUgCCGCACGa -5'
2677 5' -56.7 NC_001491.2 + 52844 0.67 0.836475
Target:  5'- gGGCcaGCACcCAGGCacaGCCGCGGUcUGCg -3'
miRNA:   3'- -CCG--CGUGuGUUUG---CGGUGCCGcACGa -5'
2677 5' -56.7 NC_001491.2 + 10440 0.67 0.828172
Target:  5'- cGGCGgACGCAGAgCGCUACugGGcCGcGCUa -3'
miRNA:   3'- -CCGCgUGUGUUU-GCGGUG--CC-GCaCGA- -5'
2677 5' -56.7 NC_001491.2 + 8798 0.67 0.811043
Target:  5'- gGGCGCuGCugGAuuuuuACGCCAUGGgGUacacGCa -3'
miRNA:   3'- -CCGCG-UGugUU-----UGCGGUGCCgCA----CGa -5'
2677 5' -56.7 NC_001491.2 + 52771 0.67 0.811043
Target:  5'- cGGCGCGCuuAAGCGCCGCcGUuaUGCc -3'
miRNA:   3'- -CCGCGUGugUUUGCGGUGcCGc-ACGa -5'
2677 5' -56.7 NC_001491.2 + 133941 0.67 0.811043
Target:  5'- aGCGCGCGauagcuguacCAGGCGCCGagagGGCGUuGCc -3'
miRNA:   3'- cCGCGUGU----------GUUUGCGGUg---CCGCA-CGa -5'
2677 5' -56.7 NC_001491.2 + 3598 0.67 0.811043
Target:  5'- cGGCGgACGCcc-CGCCGCGGag-GCg -3'
miRNA:   3'- -CCGCgUGUGuuuGCGGUGCCgcaCGa -5'
2677 5' -56.7 NC_001491.2 + 12511 0.67 0.811043
Target:  5'- cGGgGCGgGgcGGCGUCGCGGCG-GCg -3'
miRNA:   3'- -CCgCGUgUguUUGCGGUGCCGCaCGa -5'
2677 5' -56.7 NC_001491.2 + 27413 0.67 0.808416
Target:  5'- gGGCGUggaaucgcgggaacACACAcACGCCugcUGGCGUGg- -3'
miRNA:   3'- -CCGCG--------------UGUGUuUGCGGu--GCCGCACga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.