Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2677 | 5' | -56.7 | NC_001491.2 | + | 8561 | 0.68 | 0.756059 |
Target: 5'- --aGCGCAUcGACGCCGUGcGCGUGCc -3' miRNA: 3'- ccgCGUGUGuUUGCGGUGC-CGCACGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 104979 | 0.68 | 0.756059 |
Target: 5'- gGGcCGC-CGCAGAUuuggccgggGCCGCGGCGgggGCc -3' miRNA: 3'- -CC-GCGuGUGUUUG---------CGGUGCCGCa--CGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 105045 | 0.68 | 0.756059 |
Target: 5'- gGGcCGC-CGCAGAUuuggccgggGCCGCGGCGgggGCc -3' miRNA: 3'- -CC-GCGuGUGUUUG---------CGGUGCCGCa--CGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 43939 | 0.68 | 0.762712 |
Target: 5'- aGGCGCAacucugugccucauUACGAcccacACGCCGgGGCGggugGCg -3' miRNA: 3'- -CCGCGU--------------GUGUU-----UGCGGUgCCGCa---CGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 2609 | 0.68 | 0.765547 |
Target: 5'- aGGC-CGCGCAAGCcgcgucgcuggGCCGCGGaGUGUg -3' miRNA: 3'- -CCGcGUGUGUUUG-----------CGGUGCCgCACGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 35588 | 0.68 | 0.774917 |
Target: 5'- gGGCGcCGCGCAGA-GCCACcGCGcgGCc -3' miRNA: 3'- -CCGC-GUGUGUUUgCGGUGcCGCa-CGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 27153 | 0.68 | 0.784161 |
Target: 5'- cGGCGCGCACGA---CCGCGGCa---- -3' miRNA: 3'- -CCGCGUGUGUUugcGGUGCCGcacga -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 34779 | 0.68 | 0.793269 |
Target: 5'- cGGCGCGCGCuucggggagcuGGCgGCCAgCGGCccGCUg -3' miRNA: 3'- -CCGCGUGUGu----------UUG-CGGU-GCCGcaCGA- -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 58015 | 0.69 | 0.726978 |
Target: 5'- uGGCGUACGCcguaGCCACGG-G-GCUa -3' miRNA: 3'- -CCGCGUGUGuuugCGGUGCCgCaCGA- -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 10368 | 0.69 | 0.746461 |
Target: 5'- cGCGCcCGCAGAUGUacgaGCGcGCGUGUg -3' miRNA: 3'- cCGCGuGUGUUUGCGg---UGC-CGCACGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 3361 | 0.7 | 0.64651 |
Target: 5'- aGCGCAC-CAGcgGCGCCACGGUccggGCc -3' miRNA: 3'- cCGCGUGuGUU--UGCGGUGCCGca--CGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 148673 | 0.7 | 0.653643 |
Target: 5'- gGGgGCGCACAGcccagcgaugcgcgGCGCCcccauuggGCGGCGguggGCa -3' miRNA: 3'- -CCgCGUGUGUU--------------UGCGG--------UGCCGCa---CGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 35854 | 0.7 | 0.656697 |
Target: 5'- cGGUccuGCACAUggGgGCCACGGagcuGUGCc -3' miRNA: 3'- -CCG---CGUGUGuuUgCGGUGCCg---CACGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 132824 | 0.7 | 0.675992 |
Target: 5'- aGGCGUAUGCuaccaagGGGCGCCAgaGCGUGCg -3' miRNA: 3'- -CCGCGUGUG-------UUUGCGGUgcCGCACGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 37899 | 0.7 | 0.677005 |
Target: 5'- aGCGUaguACACAcgcagagaauaGACGCCACcGUGUGCUc -3' miRNA: 3'- cCGCG---UGUGU-----------UUGCGGUGcCGCACGA- -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 134618 | 0.7 | 0.681051 |
Target: 5'- cGGUGCGCccggACAGACcgucucuauagcugaGUCuCGGCGUGCUg -3' miRNA: 3'- -CCGCGUG----UGUUUG---------------CGGuGCCGCACGA- -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 126970 | 0.7 | 0.687107 |
Target: 5'- gGGCGCGCGC---CGCC-UGGCG-GCa -3' miRNA: 3'- -CCGCGUGUGuuuGCGGuGCCGCaCGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 64232 | 0.7 | 0.697165 |
Target: 5'- cGGCGUcaaACGCGGccacGgGCgGCGGCGUGUc -3' miRNA: 3'- -CCGCG---UGUGUU----UgCGgUGCCGCACGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 4441 | 0.71 | 0.62611 |
Target: 5'- cGGgGCGCACGAAgccgcCGCCGgGGcCGaUGCUg -3' miRNA: 3'- -CCgCGUGUGUUU-----GCGGUgCC-GC-ACGA- -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 52876 | 0.72 | 0.545269 |
Target: 5'- cGGCGCugGC-AACGCgCGCGGUGUu-- -3' miRNA: 3'- -CCGCGugUGuUUGCG-GUGCCGCAcga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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