miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2677 5' -56.7 NC_001491.2 + 66074 1.09 0.002327
Target:  5'- aGGCGCACACAAACGCCACGGCGUGCUc -3'
miRNA:   3'- -CCGCGUGUGUUUGCGGUGCCGCACGA- -5'
2677 5' -56.7 NC_001491.2 + 26713 0.87 0.073845
Target:  5'- gGGCGCGCAgGuACGCCGCGGCG-GCUg -3'
miRNA:   3'- -CCGCGUGUgUuUGCGGUGCCGCaCGA- -5'
2677 5' -56.7 NC_001491.2 + 5636 0.79 0.246061
Target:  5'- uGCGCugGCug--GCCAUGGCGUGCUa -3'
miRNA:   3'- cCGCGugUGuuugCGGUGCCGCACGA- -5'
2677 5' -56.7 NC_001491.2 + 28537 0.78 0.277077
Target:  5'- aGGCGguuCACAUcgGGGCGCCACGGCGggGCg -3'
miRNA:   3'- -CCGC---GUGUG--UUUGCGGUGCCGCa-CGa -5'
2677 5' -56.7 NC_001491.2 + 12551 0.76 0.356082
Target:  5'- gGGCGCgggagcGCGCGAGCGCCGCcucggGGCGcGCa -3'
miRNA:   3'- -CCGCG------UGUGUUUGCGGUG-----CCGCaCGa -5'
2677 5' -56.7 NC_001491.2 + 82094 0.75 0.388489
Target:  5'- gGGCGCGC-UAAACgGCCAUGGCGUuCUa -3'
miRNA:   3'- -CCGCGUGuGUUUG-CGGUGCCGCAcGA- -5'
2677 5' -56.7 NC_001491.2 + 10041 0.75 0.391835
Target:  5'- cGGCGCACGCGGucucgcugccgcGCuccgugggggacuuuGCCGCGGuCGUGCg -3'
miRNA:   3'- -CCGCGUGUGUU------------UG---------------CGGUGCC-GCACGa -5'
2677 5' -56.7 NC_001491.2 + 10508 0.74 0.449646
Target:  5'- cGC-CACGCAGcCGCCGCGGCGUaccuGCg -3'
miRNA:   3'- cCGcGUGUGUUuGCGGUGCCGCA----CGa -5'
2677 5' -56.7 NC_001491.2 + 52876 0.72 0.545269
Target:  5'- cGGCGCugGC-AACGCgCGCGGUGUu-- -3'
miRNA:   3'- -CCGCGugUGuUUGCG-GUGCCGCAcga -5'
2677 5' -56.7 NC_001491.2 + 80339 0.72 0.545269
Target:  5'- uGGCaaGCGC-CAAGCGaaACGGCGUGUa -3'
miRNA:   3'- -CCG--CGUGuGUUUGCggUGCCGCACGa -5'
2677 5' -56.7 NC_001491.2 + 27190 0.72 0.565254
Target:  5'- cGGCaGCGagacCGCGuGCGCCGCGGUguccGUGCUg -3'
miRNA:   3'- -CCG-CGU----GUGUuUGCGGUGCCG----CACGA- -5'
2677 5' -56.7 NC_001491.2 + 4441 0.71 0.62611
Target:  5'- cGGgGCGCACGAAgccgcCGCCGgGGcCGaUGCUg -3'
miRNA:   3'- -CCgCGUGUGUUU-----GCGGUgCC-GC-ACGA- -5'
2677 5' -56.7 NC_001491.2 + 3361 0.7 0.64651
Target:  5'- aGCGCAC-CAGcgGCGCCACGGUccggGCc -3'
miRNA:   3'- cCGCGUGuGUU--UGCGGUGCCGca--CGa -5'
2677 5' -56.7 NC_001491.2 + 148673 0.7 0.653643
Target:  5'- gGGgGCGCACAGcccagcgaugcgcgGCGCCcccauuggGCGGCGguggGCa -3'
miRNA:   3'- -CCgCGUGUGUU--------------UGCGG--------UGCCGCa---CGa -5'
2677 5' -56.7 NC_001491.2 + 35854 0.7 0.656697
Target:  5'- cGGUccuGCACAUggGgGCCACGGagcuGUGCc -3'
miRNA:   3'- -CCG---CGUGUGuuUgCGGUGCCg---CACGa -5'
2677 5' -56.7 NC_001491.2 + 132824 0.7 0.675992
Target:  5'- aGGCGUAUGCuaccaagGGGCGCCAgaGCGUGCg -3'
miRNA:   3'- -CCGCGUGUG-------UUUGCGGUgcCGCACGa -5'
2677 5' -56.7 NC_001491.2 + 37899 0.7 0.677005
Target:  5'- aGCGUaguACACAcgcagagaauaGACGCCACcGUGUGCUc -3'
miRNA:   3'- cCGCG---UGUGU-----------UUGCGGUGcCGCACGA- -5'
2677 5' -56.7 NC_001491.2 + 134618 0.7 0.681051
Target:  5'- cGGUGCGCccggACAGACcgucucuauagcugaGUCuCGGCGUGCUg -3'
miRNA:   3'- -CCGCGUG----UGUUUG---------------CGGuGCCGCACGA- -5'
2677 5' -56.7 NC_001491.2 + 126970 0.7 0.687107
Target:  5'- gGGCGCGCGC---CGCC-UGGCG-GCa -3'
miRNA:   3'- -CCGCGUGUGuuuGCGGuGCCGCaCGa -5'
2677 5' -56.7 NC_001491.2 + 64232 0.7 0.697165
Target:  5'- cGGCGUcaaACGCGGccacGgGCgGCGGCGUGUc -3'
miRNA:   3'- -CCGCG---UGUGUU----UgCGgUGCCGCACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.