miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2677 5' -56.7 NC_001491.2 + 58015 0.69 0.726978
Target:  5'- uGGCGUACGCcguaGCCACGG-G-GCUa -3'
miRNA:   3'- -CCGCGUGUGuuugCGGUGCCgCaCGA- -5'
2677 5' -56.7 NC_001491.2 + 10368 0.69 0.746461
Target:  5'- cGCGCcCGCAGAUGUacgaGCGcGCGUGUg -3'
miRNA:   3'- cCGCGuGUGUUUGCGg---UGC-CGCACGa -5'
2677 5' -56.7 NC_001491.2 + 105045 0.68 0.756059
Target:  5'- gGGcCGC-CGCAGAUuuggccgggGCCGCGGCGgggGCc -3'
miRNA:   3'- -CC-GCGuGUGUUUG---------CGGUGCCGCa--CGa -5'
2677 5' -56.7 NC_001491.2 + 104979 0.68 0.756059
Target:  5'- gGGcCGC-CGCAGAUuuggccgggGCCGCGGCGgggGCc -3'
miRNA:   3'- -CC-GCGuGUGUUUG---------CGGUGCCGCa--CGa -5'
2677 5' -56.7 NC_001491.2 + 8561 0.68 0.756059
Target:  5'- --aGCGCAUcGACGCCGUGcGCGUGCc -3'
miRNA:   3'- ccgCGUGUGuUUGCGGUGC-CGCACGa -5'
2677 5' -56.7 NC_001491.2 + 43939 0.68 0.762712
Target:  5'- aGGCGCAacucugugccucauUACGAcccacACGCCGgGGCGggugGCg -3'
miRNA:   3'- -CCGCGU--------------GUGUU-----UGCGGUgCCGCa---CGa -5'
2677 5' -56.7 NC_001491.2 + 2609 0.68 0.765547
Target:  5'- aGGC-CGCGCAAGCcgcgucgcuggGCCGCGGaGUGUg -3'
miRNA:   3'- -CCGcGUGUGUUUG-----------CGGUGCCgCACGa -5'
2677 5' -56.7 NC_001491.2 + 35588 0.68 0.774917
Target:  5'- gGGCGcCGCGCAGA-GCCACcGCGcgGCc -3'
miRNA:   3'- -CCGC-GUGUGUUUgCGGUGcCGCa-CGa -5'
2677 5' -56.7 NC_001491.2 + 27153 0.68 0.784161
Target:  5'- cGGCGCGCACGA---CCGCGGCa---- -3'
miRNA:   3'- -CCGCGUGUGUUugcGGUGCCGcacga -5'
2677 5' -56.7 NC_001491.2 + 34779 0.68 0.793269
Target:  5'- cGGCGCGCGCuucggggagcuGGCgGCCAgCGGCccGCUg -3'
miRNA:   3'- -CCGCGUGUGu----------UUG-CGGU-GCCGcaCGA- -5'
2677 5' -56.7 NC_001491.2 + 27413 0.67 0.808416
Target:  5'- gGGCGUggaaucgcgggaacACACAcACGCCugcUGGCGUGg- -3'
miRNA:   3'- -CCGCG--------------UGUGUuUGCGGu--GCCGCACga -5'
2677 5' -56.7 NC_001491.2 + 3598 0.67 0.811043
Target:  5'- cGGCGgACGCcc-CGCCGCGGag-GCg -3'
miRNA:   3'- -CCGCgUGUGuuuGCGGUGCCgcaCGa -5'
2677 5' -56.7 NC_001491.2 + 133941 0.67 0.811043
Target:  5'- aGCGCGCGauagcuguacCAGGCGCCGagagGGCGUuGCc -3'
miRNA:   3'- cCGCGUGU----------GUUUGCGGUg---CCGCA-CGa -5'
2677 5' -56.7 NC_001491.2 + 12511 0.67 0.811043
Target:  5'- cGGgGCGgGgcGGCGUCGCGGCG-GCg -3'
miRNA:   3'- -CCgCGUgUguUUGCGGUGCCGCaCGa -5'
2677 5' -56.7 NC_001491.2 + 52771 0.67 0.811043
Target:  5'- cGGCGCGCuuAAGCGCCGCcGUuaUGCc -3'
miRNA:   3'- -CCGCGUGugUUUGCGGUGcCGc-ACGa -5'
2677 5' -56.7 NC_001491.2 + 8798 0.67 0.811043
Target:  5'- gGGCGCuGCugGAuuuuuACGCCAUGGgGUacacGCa -3'
miRNA:   3'- -CCGCG-UGugUU-----UGCGGUGCCgCA----CGa -5'
2677 5' -56.7 NC_001491.2 + 10440 0.67 0.828172
Target:  5'- cGGCGgACGCAGAgCGCUACugGGcCGcGCUa -3'
miRNA:   3'- -CCGCgUGUGUUU-GCGGUG--CC-GCaCGA- -5'
2677 5' -56.7 NC_001491.2 + 120156 0.67 0.836475
Target:  5'- --aGCACGCAGACGagacccaaaaCGgGGUGUGCa -3'
miRNA:   3'- ccgCGUGUGUUUGCg---------GUgCCGCACGa -5'
2677 5' -56.7 NC_001491.2 + 52844 0.67 0.836475
Target:  5'- gGGCcaGCACcCAGGCacaGCCGCGGUcUGCg -3'
miRNA:   3'- -CCG--CGUGuGUUUG---CGGUGCCGcACGa -5'
2677 5' -56.7 NC_001491.2 + 84738 0.67 0.84379
Target:  5'- uGGCGC-CACAggUGCCAgccggggaagcccCGGgcaGUGCc -3'
miRNA:   3'- -CCGCGuGUGUuuGCGGU-------------GCCg--CACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.