miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2677 5' -56.7 NC_001491.2 + 28537 0.78 0.277077
Target:  5'- aGGCGguuCACAUcgGGGCGCCACGGCGggGCg -3'
miRNA:   3'- -CCGC---GUGUG--UUUGCGGUGCCGCa-CGa -5'
2677 5' -56.7 NC_001491.2 + 34779 0.68 0.793269
Target:  5'- cGGCGCGCGCuucggggagcuGGCgGCCAgCGGCccGCUg -3'
miRNA:   3'- -CCGCGUGUGu----------UUG-CGGU-GCCGcaCGA- -5'
2677 5' -56.7 NC_001491.2 + 35588 0.68 0.774917
Target:  5'- gGGCGcCGCGCAGA-GCCACcGCGcgGCc -3'
miRNA:   3'- -CCGC-GUGUGUUUgCGGUGcCGCa-CGa -5'
2677 5' -56.7 NC_001491.2 + 35854 0.7 0.656697
Target:  5'- cGGUccuGCACAUggGgGCCACGGagcuGUGCc -3'
miRNA:   3'- -CCG---CGUGUGuuUgCGGUGCCg---CACGa -5'
2677 5' -56.7 NC_001491.2 + 37899 0.7 0.677005
Target:  5'- aGCGUaguACACAcgcagagaauaGACGCCACcGUGUGCUc -3'
miRNA:   3'- cCGCG---UGUGU-----------UUGCGGUGcCGCACGA- -5'
2677 5' -56.7 NC_001491.2 + 42691 0.65 0.893738
Target:  5'- cGGuCGCACGCGGaaaaccuggaucacACGCCACucuggGGUG-GCa -3'
miRNA:   3'- -CC-GCGUGUGUU--------------UGCGGUG-----CCGCaCGa -5'
2677 5' -56.7 NC_001491.2 + 43939 0.68 0.762712
Target:  5'- aGGCGCAacucugugccucauUACGAcccacACGCCGgGGCGggugGCg -3'
miRNA:   3'- -CCGCGU--------------GUGUU-----UGCGGUgCCGCa---CGa -5'
2677 5' -56.7 NC_001491.2 + 52771 0.67 0.811043
Target:  5'- cGGCGCGCuuAAGCGCCGCcGUuaUGCc -3'
miRNA:   3'- -CCGCGUGugUUUGCGGUGcCGc-ACGa -5'
2677 5' -56.7 NC_001491.2 + 52844 0.67 0.836475
Target:  5'- gGGCcaGCACcCAGGCacaGCCGCGGUcUGCg -3'
miRNA:   3'- -CCG--CGUGuGUUUG---CGGUGCCGcACGa -5'
2677 5' -56.7 NC_001491.2 + 52876 0.72 0.545269
Target:  5'- cGGCGCugGC-AACGCgCGCGGUGUu-- -3'
miRNA:   3'- -CCGCGugUGuUUGCG-GUGCCGCAcga -5'
2677 5' -56.7 NC_001491.2 + 58015 0.69 0.726978
Target:  5'- uGGCGUACGCcguaGCCACGG-G-GCUa -3'
miRNA:   3'- -CCGCGUGUGuuugCGGUGCCgCaCGA- -5'
2677 5' -56.7 NC_001491.2 + 64232 0.7 0.697165
Target:  5'- cGGCGUcaaACGCGGccacGgGCgGCGGCGUGUc -3'
miRNA:   3'- -CCGCG---UGUGUU----UgCGgUGCCGCACGa -5'
2677 5' -56.7 NC_001491.2 + 66074 1.09 0.002327
Target:  5'- aGGCGCACACAAACGCCACGGCGUGCUc -3'
miRNA:   3'- -CCGCGUGUGUUUGCGGUGCCGCACGA- -5'
2677 5' -56.7 NC_001491.2 + 80339 0.72 0.545269
Target:  5'- uGGCaaGCGC-CAAGCGaaACGGCGUGUa -3'
miRNA:   3'- -CCG--CGUGuGUUUGCggUGCCGCACGa -5'
2677 5' -56.7 NC_001491.2 + 82094 0.75 0.388489
Target:  5'- gGGCGCGC-UAAACgGCCAUGGCGUuCUa -3'
miRNA:   3'- -CCGCGUGuGUUUG-CGGUGCCGCAcGA- -5'
2677 5' -56.7 NC_001491.2 + 82217 0.66 0.884267
Target:  5'- uGCGUACAUAGAcgacguaaacaaagcCGCUGCGGCcuuuuugGUGCg -3'
miRNA:   3'- cCGCGUGUGUUU---------------GCGGUGCCG-------CACGa -5'
2677 5' -56.7 NC_001491.2 + 84738 0.67 0.84379
Target:  5'- uGGCGC-CACAggUGCCAgccggggaagcccCGGgcaGUGCc -3'
miRNA:   3'- -CCGCGuGUGUuuGCGGU-------------GCCg--CACGa -5'
2677 5' -56.7 NC_001491.2 + 102786 0.67 0.85252
Target:  5'- uGCGCGCuccaGCAAACauuuaGCCAUGGC-UGCc -3'
miRNA:   3'- cCGCGUG----UGUUUG-----CGGUGCCGcACGa -5'
2677 5' -56.7 NC_001491.2 + 103364 0.66 0.882181
Target:  5'- uGGUGCgACACGcagcaaugaguAACGCCAUGGCa---- -3'
miRNA:   3'- -CCGCG-UGUGU-----------UUGCGGUGCCGcacga -5'
2677 5' -56.7 NC_001491.2 + 104979 0.68 0.756059
Target:  5'- gGGcCGC-CGCAGAUuuggccgggGCCGCGGCGgggGCc -3'
miRNA:   3'- -CC-GCGuGUGUUUG---------CGGUGCCGCa--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.