Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2677 | 5' | -56.7 | NC_001491.2 | + | 105045 | 0.68 | 0.756059 |
Target: 5'- gGGcCGC-CGCAGAUuuggccgggGCCGCGGCGgggGCc -3' miRNA: 3'- -CC-GCGuGUGUUUG---------CGGUGCCGCa--CGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 105111 | 0.66 | 0.882181 |
Target: 5'- gGGcCGC-CGCAGAUuuggccgggGCCGCGGCGgggGUc -3' miRNA: 3'- -CC-GCGuGUGUUUG---------CGGUGCCGCa--CGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 112966 | 0.66 | 0.887018 |
Target: 5'- cGCGaacCACGAACGCCucgguaacacucccAUGGCcGUGCg -3' miRNA: 3'- cCGCgu-GUGUUUGCGG--------------UGCCG-CACGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 120156 | 0.67 | 0.836475 |
Target: 5'- --aGCACGCAGACGagacccaaaaCGgGGUGUGCa -3' miRNA: 3'- ccgCGUGUGUUUGCg---------GUgCCGCACGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 126970 | 0.7 | 0.687107 |
Target: 5'- gGGCGCGCGC---CGCC-UGGCG-GCa -3' miRNA: 3'- -CCGCGUGUGuuuGCGGuGCCGCaCGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 132824 | 0.7 | 0.675992 |
Target: 5'- aGGCGUAUGCuaccaagGGGCGCCAgaGCGUGCg -3' miRNA: 3'- -CCGCGUGUG-------UUUGCGGUgcCGCACGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 133941 | 0.67 | 0.811043 |
Target: 5'- aGCGCGCGauagcuguacCAGGCGCCGagagGGCGUuGCc -3' miRNA: 3'- cCGCGUGU----------GUUUGCGGUg---CCGCA-CGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 134618 | 0.7 | 0.681051 |
Target: 5'- cGGUGCGCccggACAGACcgucucuauagcugaGUCuCGGCGUGCUg -3' miRNA: 3'- -CCGCGUG----UGUUUG---------------CGGuGCCGCACGA- -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 144623 | 0.66 | 0.889058 |
Target: 5'- --gGUACACAuGCGCCugGGCcaacGCg -3' miRNA: 3'- ccgCGUGUGUuUGCGGugCCGca--CGa -5' |
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2677 | 5' | -56.7 | NC_001491.2 | + | 148673 | 0.7 | 0.653643 |
Target: 5'- gGGgGCGCACAGcccagcgaugcgcgGCGCCcccauuggGCGGCGguggGCa -3' miRNA: 3'- -CCgCGUGUGUU--------------UGCGG--------UGCCGCa---CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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