miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2677 5' -56.7 NC_001491.2 + 52876 0.72 0.545269
Target:  5'- cGGCGCugGC-AACGCgCGCGGUGUu-- -3'
miRNA:   3'- -CCGCGugUGuUUGCG-GUGCCGCAcga -5'
2677 5' -56.7 NC_001491.2 + 52844 0.67 0.836475
Target:  5'- gGGCcaGCACcCAGGCacaGCCGCGGUcUGCg -3'
miRNA:   3'- -CCG--CGUGuGUUUG---CGGUGCCGcACGa -5'
2677 5' -56.7 NC_001491.2 + 52771 0.67 0.811043
Target:  5'- cGGCGCGCuuAAGCGCCGCcGUuaUGCc -3'
miRNA:   3'- -CCGCGUGugUUUGCGGUGcCGc-ACGa -5'
2677 5' -56.7 NC_001491.2 + 43939 0.68 0.762712
Target:  5'- aGGCGCAacucugugccucauUACGAcccacACGCCGgGGCGggugGCg -3'
miRNA:   3'- -CCGCGU--------------GUGUU-----UGCGGUgCCGCa---CGa -5'
2677 5' -56.7 NC_001491.2 + 42691 0.65 0.893738
Target:  5'- cGGuCGCACGCGGaaaaccuggaucacACGCCACucuggGGUG-GCa -3'
miRNA:   3'- -CC-GCGUGUGUU--------------UGCGGUG-----CCGCaCGa -5'
2677 5' -56.7 NC_001491.2 + 37899 0.7 0.677005
Target:  5'- aGCGUaguACACAcgcagagaauaGACGCCACcGUGUGCUc -3'
miRNA:   3'- cCGCG---UGUGU-----------UUGCGGUGcCGCACGA- -5'
2677 5' -56.7 NC_001491.2 + 35854 0.7 0.656697
Target:  5'- cGGUccuGCACAUggGgGCCACGGagcuGUGCc -3'
miRNA:   3'- -CCG---CGUGUGuuUgCGGUGCCg---CACGa -5'
2677 5' -56.7 NC_001491.2 + 35588 0.68 0.774917
Target:  5'- gGGCGcCGCGCAGA-GCCACcGCGcgGCc -3'
miRNA:   3'- -CCGC-GUGUGUUUgCGGUGcCGCa-CGa -5'
2677 5' -56.7 NC_001491.2 + 34779 0.68 0.793269
Target:  5'- cGGCGCGCGCuucggggagcuGGCgGCCAgCGGCccGCUg -3'
miRNA:   3'- -CCGCGUGUGu----------UUG-CGGU-GCCGcaCGA- -5'
2677 5' -56.7 NC_001491.2 + 28537 0.78 0.277077
Target:  5'- aGGCGguuCACAUcgGGGCGCCACGGCGggGCg -3'
miRNA:   3'- -CCGC---GUGUG--UUUGCGGUGCCGCa-CGa -5'
2677 5' -56.7 NC_001491.2 + 27413 0.67 0.808416
Target:  5'- gGGCGUggaaucgcgggaacACACAcACGCCugcUGGCGUGg- -3'
miRNA:   3'- -CCGCG--------------UGUGUuUGCGGu--GCCGCACga -5'
2677 5' -56.7 NC_001491.2 + 27190 0.72 0.565254
Target:  5'- cGGCaGCGagacCGCGuGCGCCGCGGUguccGUGCUg -3'
miRNA:   3'- -CCG-CGU----GUGUuUGCGGUGCCG----CACGA- -5'
2677 5' -56.7 NC_001491.2 + 27153 0.68 0.784161
Target:  5'- cGGCGCGCACGA---CCGCGGCa---- -3'
miRNA:   3'- -CCGCGUGUGUUugcGGUGCCGcacga -5'
2677 5' -56.7 NC_001491.2 + 26713 0.87 0.073845
Target:  5'- gGGCGCGCAgGuACGCCGCGGCG-GCUg -3'
miRNA:   3'- -CCGCGUGUgUuUGCGGUGCCGCaCGA- -5'
2677 5' -56.7 NC_001491.2 + 25201 0.66 0.860248
Target:  5'- gGGUGCAUGCucgGGCGCUccuacuucagGCGGUGUcGCg -3'
miRNA:   3'- -CCGCGUGUGu--UUGCGG----------UGCCGCA-CGa -5'
2677 5' -56.7 NC_001491.2 + 12551 0.76 0.356082
Target:  5'- gGGCGCgggagcGCGCGAGCGCCGCcucggGGCGcGCa -3'
miRNA:   3'- -CCGCG------UGUGUUUGCGGUG-----CCGCaCGa -5'
2677 5' -56.7 NC_001491.2 + 12511 0.67 0.811043
Target:  5'- cGGgGCGgGgcGGCGUCGCGGCG-GCg -3'
miRNA:   3'- -CCgCGUgUguUUGCGGUGCCGCaCGa -5'
2677 5' -56.7 NC_001491.2 + 10508 0.74 0.449646
Target:  5'- cGC-CACGCAGcCGCCGCGGCGUaccuGCg -3'
miRNA:   3'- cCGcGUGUGUUuGCGGUGCCGCA----CGa -5'
2677 5' -56.7 NC_001491.2 + 10440 0.67 0.828172
Target:  5'- cGGCGgACGCAGAgCGCUACugGGcCGcGCUa -3'
miRNA:   3'- -CCGCgUGUGUUU-GCGGUG--CC-GCaCGA- -5'
2677 5' -56.7 NC_001491.2 + 10368 0.69 0.746461
Target:  5'- cGCGCcCGCAGAUGUacgaGCGcGCGUGUg -3'
miRNA:   3'- cCGCGuGUGUUUGCGg---UGC-CGCACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.