miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2677 5' -56.7 NC_001491.2 + 10139 0.66 0.889058
Target:  5'- gGGcCGCcCGCGGAgGCCugGccgcGCGUGUa -3'
miRNA:   3'- -CC-GCGuGUGUUUgCGGugC----CGCACGa -5'
2677 5' -56.7 NC_001491.2 + 10041 0.75 0.391835
Target:  5'- cGGCGCACGCGGucucgcugccgcGCuccgugggggacuuuGCCGCGGuCGUGCg -3'
miRNA:   3'- -CCGCGUGUGUU------------UG---------------CGGUGCC-GCACGa -5'
2677 5' -56.7 NC_001491.2 + 9247 0.66 0.875084
Target:  5'- aGCGC-CGCAAGCGCCAaccccccaagGGUGaGCg -3'
miRNA:   3'- cCGCGuGUGUUUGCGGUg---------CCGCaCGa -5'
2677 5' -56.7 NC_001491.2 + 8798 0.67 0.811043
Target:  5'- gGGCGCuGCugGAuuuuuACGCCAUGGgGUacacGCa -3'
miRNA:   3'- -CCGCG-UGugUU-----UGCGGUGCCgCA----CGa -5'
2677 5' -56.7 NC_001491.2 + 8561 0.68 0.756059
Target:  5'- --aGCGCAUcGACGCCGUGcGCGUGCc -3'
miRNA:   3'- ccgCGUGUGuUUGCGGUGC-CGCACGa -5'
2677 5' -56.7 NC_001491.2 + 5636 0.79 0.246061
Target:  5'- uGCGCugGCug--GCCAUGGCGUGCUa -3'
miRNA:   3'- cCGCGugUGuuugCGGUGCCGCACGA- -5'
2677 5' -56.7 NC_001491.2 + 4441 0.71 0.62611
Target:  5'- cGGgGCGCACGAAgccgcCGCCGgGGcCGaUGCUg -3'
miRNA:   3'- -CCgCGUGUGUUU-----GCGGUgCC-GC-ACGA- -5'
2677 5' -56.7 NC_001491.2 + 3598 0.67 0.811043
Target:  5'- cGGCGgACGCcc-CGCCGCGGag-GCg -3'
miRNA:   3'- -CCGCgUGUGuuuGCGGUGCCgcaCGa -5'
2677 5' -56.7 NC_001491.2 + 3361 0.7 0.64651
Target:  5'- aGCGCAC-CAGcgGCGCCACGGUccggGCc -3'
miRNA:   3'- cCGCGUGuGUU--UGCGGUGCCGca--CGa -5'
2677 5' -56.7 NC_001491.2 + 2609 0.68 0.765547
Target:  5'- aGGC-CGCGCAAGCcgcgucgcuggGCCGCGGaGUGUg -3'
miRNA:   3'- -CCGcGUGUGUUUG-----------CGGUGCCgCACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.