miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2677 5' -56.7 NC_001491.2 + 35588 0.68 0.774917
Target:  5'- gGGCGcCGCGCAGA-GCCACcGCGcgGCc -3'
miRNA:   3'- -CCGC-GUGUGUUUgCGGUGcCGCa-CGa -5'
2677 5' -56.7 NC_001491.2 + 27153 0.68 0.784161
Target:  5'- cGGCGCGCACGA---CCGCGGCa---- -3'
miRNA:   3'- -CCGCGUGUGUUugcGGUGCCGcacga -5'
2677 5' -56.7 NC_001491.2 + 34779 0.68 0.793269
Target:  5'- cGGCGCGCGCuucggggagcuGGCgGCCAgCGGCccGCUg -3'
miRNA:   3'- -CCGCGUGUGu----------UUG-CGGU-GCCGcaCGA- -5'
2677 5' -56.7 NC_001491.2 + 27413 0.67 0.808416
Target:  5'- gGGCGUggaaucgcgggaacACACAcACGCCugcUGGCGUGg- -3'
miRNA:   3'- -CCGCG--------------UGUGUuUGCGGu--GCCGCACga -5'
2677 5' -56.7 NC_001491.2 + 8798 0.67 0.811043
Target:  5'- gGGCGCuGCugGAuuuuuACGCCAUGGgGUacacGCa -3'
miRNA:   3'- -CCGCG-UGugUU-----UGCGGUGCCgCA----CGa -5'
2677 5' -56.7 NC_001491.2 + 52771 0.67 0.811043
Target:  5'- cGGCGCGCuuAAGCGCCGCcGUuaUGCc -3'
miRNA:   3'- -CCGCGUGugUUUGCGGUGcCGc-ACGa -5'
2677 5' -56.7 NC_001491.2 + 133941 0.67 0.811043
Target:  5'- aGCGCGCGauagcuguacCAGGCGCCGagagGGCGUuGCc -3'
miRNA:   3'- cCGCGUGU----------GUUUGCGGUg---CCGCA-CGa -5'
2677 5' -56.7 NC_001491.2 + 3598 0.67 0.811043
Target:  5'- cGGCGgACGCcc-CGCCGCGGag-GCg -3'
miRNA:   3'- -CCGCgUGUGuuuGCGGUGCCgcaCGa -5'
2677 5' -56.7 NC_001491.2 + 12511 0.67 0.811043
Target:  5'- cGGgGCGgGgcGGCGUCGCGGCG-GCg -3'
miRNA:   3'- -CCgCGUgUguUUGCGGUGCCGCaCGa -5'
2677 5' -56.7 NC_001491.2 + 42691 0.65 0.893738
Target:  5'- cGGuCGCACGCGGaaaaccuggaucacACGCCACucuggGGUG-GCa -3'
miRNA:   3'- -CC-GCGUGUGUU--------------UGCGGUG-----CCGCaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.