miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26770 5' -60 NC_005808.1 + 17834 0.66 0.438584
Target:  5'- uCGGGCGGGUUgauGC-CCGCCaCCguggCCUCg -3'
miRNA:   3'- -GCUUGCCCAGau-CGuGGUGG-GG----GGGG- -5'
26770 5' -60 NC_005808.1 + 9989 0.67 0.373539
Target:  5'- uGAGCguggcgGGGUCgaaagugccgcGCGCCcgGCCCCCgCCCu -3'
miRNA:   3'- gCUUG------CCCAGau---------CGUGG--UGGGGG-GGG- -5'
26770 5' -60 NC_005808.1 + 33584 0.67 0.358332
Target:  5'- aCGAACuGGU---GCGCCGCCUgcuggaagcgCCCCCg -3'
miRNA:   3'- -GCUUGcCCAgauCGUGGUGGG----------GGGGG- -5'
26770 5' -60 NC_005808.1 + 34966 0.67 0.392711
Target:  5'- gGcgUGGGUCga--GCCGCgCCCCCUg -3'
miRNA:   3'- gCuuGCCCAGaucgUGGUGgGGGGGG- -5'
26770 5' -60 NC_005808.1 + 23937 0.69 0.268276
Target:  5'- aGGcCGGGggcgGGCGCCGCCCCCgaucacgaaUCCa -3'
miRNA:   3'- gCUuGCCCaga-UCGUGGUGGGGG---------GGG- -5'
26770 5' -60 NC_005808.1 + 35645 0.73 0.139587
Target:  5'- cCGAGCGGGUCaAGCGUCAauaCCCCCa -3'
miRNA:   3'- -GCUUGCCCAGaUCGUGGUgggGGGGG- -5'
26770 5' -60 NC_005808.1 + 17226 0.74 0.128651
Target:  5'- aGGACGcGGacgUUGGaCAUCACCCCCUCCa -3'
miRNA:   3'- gCUUGC-CCa--GAUC-GUGGUGGGGGGGG- -5'
26770 5' -60 NC_005808.1 + 29874 1.1 0.000234
Target:  5'- gCGAACGGGUCUAGCACCACCCCCCCCc -3'
miRNA:   3'- -GCUUGCCCAGAUCGUGGUGGGGGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.