miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26772 5' -61 NC_005808.1 + 30594 0.67 0.308416
Target:  5'- gGCCGCgcUGCUgGCCgacgUGGaaaAGGCCa -3'
miRNA:   3'- aCGGCG--ACGAgUGGa---GCCacgUCCGG- -5'
26772 5' -61 NC_005808.1 + 8852 0.67 0.30094
Target:  5'- gGCCaGCgcGUUgGCCUCGGUcgccacgaaGCGGGCg -3'
miRNA:   3'- aCGG-CGa-CGAgUGGAGCCA---------CGUCCGg -5'
26772 5' -61 NC_005808.1 + 15914 0.67 0.293604
Target:  5'- uUGCCGCUGCUgcugaugaacCACaCgauaGGcUGCGGcGCCu -3'
miRNA:   3'- -ACGGCGACGA----------GUG-Gag--CC-ACGUC-CGG- -5'
26772 5' -61 NC_005808.1 + 34846 0.67 0.28927
Target:  5'- cGCCGgUGCUgcaaucgcugaCugCgcaggaauggcaagCGGUGCAGGCg -3'
miRNA:   3'- aCGGCgACGA-----------GugGa-------------GCCACGUCCGg -5'
26772 5' -61 NC_005808.1 + 28318 0.67 0.286408
Target:  5'- gGCCGCa--UCGCCgacagcaUGGUGCAgcaGGCCa -3'
miRNA:   3'- aCGGCGacgAGUGGa------GCCACGU---CCGG- -5'
26772 5' -61 NC_005808.1 + 35170 0.67 0.286408
Target:  5'- aGCCGaaCUGCUgGCCggccaucCGGUGCccGGCUu -3'
miRNA:   3'- aCGGC--GACGAgUGGa------GCCACGu-CCGG- -5'
26772 5' -61 NC_005808.1 + 23721 0.67 0.279352
Target:  5'- gGUCGCggGCcagUGCCUCGGUggcgcgcaGCAGcGCCa -3'
miRNA:   3'- aCGGCGa-CGa--GUGGAGCCA--------CGUC-CGG- -5'
26772 5' -61 NC_005808.1 + 15603 0.67 0.275185
Target:  5'- cGCCGCUGUagccccaguUCuugcagcgucggucgGCUUCGGUGUuGGCUu -3'
miRNA:   3'- aCGGCGACG---------AG---------------UGGAGCCACGuCCGG- -5'
26772 5' -61 NC_005808.1 + 31679 0.67 0.272435
Target:  5'- gGCC-CUGCaaACCggCGG-GCAGGUCg -3'
miRNA:   3'- aCGGcGACGagUGGa-GCCaCGUCCGG- -5'
26772 5' -61 NC_005808.1 + 37382 0.67 0.272435
Target:  5'- -aCUGCUGggUAUC-CGGuUGCAGGCCa -3'
miRNA:   3'- acGGCGACgaGUGGaGCC-ACGUCCGG- -5'
26772 5' -61 NC_005808.1 + 14307 0.67 0.272435
Target:  5'- cGUCGUUGCUgaacuggcgcgCGCCUUGGcugaacUGCcGGGCCu -3'
miRNA:   3'- aCGGCGACGA-----------GUGGAGCC------ACG-UCCGG- -5'
26772 5' -61 NC_005808.1 + 26163 0.68 0.268352
Target:  5'- cGCCGuCUGCgaugcggucgcagauUUcgguggcgaugGCUUCGGUGUAGGUCg -3'
miRNA:   3'- aCGGC-GACG---------------AG-----------UGGAGCCACGUCCGG- -5'
26772 5' -61 NC_005808.1 + 19502 0.68 0.265657
Target:  5'- gGCCGCUGCgaACCguggucuugugcUCGGUGaaaccguuGGCCu -3'
miRNA:   3'- aCGGCGACGagUGG------------AGCCACgu------CCGG- -5'
26772 5' -61 NC_005808.1 + 11159 0.68 0.265657
Target:  5'- gGCCGcCUGCgCACgUUGcGUGCGcuggucGGCCg -3'
miRNA:   3'- aCGGC-GACGaGUGgAGC-CACGU------CCGG- -5'
26772 5' -61 NC_005808.1 + 5161 0.68 0.261655
Target:  5'- cGUCGCUGCUCAcgcCCUUGGcgaggguuuuguauuUGCuGGUg -3'
miRNA:   3'- aCGGCGACGAGU---GGAGCC---------------ACGuCCGg -5'
26772 5' -61 NC_005808.1 + 24142 0.68 0.259015
Target:  5'- cGCCGCcgGCgccgcgaccgUCACguuUUCGGUGCAGGaCUc -3'
miRNA:   3'- aCGGCGa-CG----------AGUG---GAGCCACGUCC-GG- -5'
26772 5' -61 NC_005808.1 + 7035 0.68 0.258358
Target:  5'- gUGCCGcCUGUugcagcaggcgcaUgGCCUCGGgcgGCAGcGUCg -3'
miRNA:   3'- -ACGGC-GACG-------------AgUGGAGCCa--CGUC-CGG- -5'
26772 5' -61 NC_005808.1 + 9661 0.68 0.248671
Target:  5'- aGCCG-UGgUCGCCcUGGccgaacagccagccgUGCAGGCCg -3'
miRNA:   3'- aCGGCgACgAGUGGaGCC---------------ACGUCCGG- -5'
26772 5' -61 NC_005808.1 + 34681 0.68 0.246139
Target:  5'- cGCCGgUGUUCGcCCUCGGcaagaugGgAGGCa -3'
miRNA:   3'- aCGGCgACGAGU-GGAGCCa------CgUCCGg -5'
26772 5' -61 NC_005808.1 + 39049 0.68 0.246139
Target:  5'- cGCUGCUGCgCugUUCGGcgGCAgcuGGCa -3'
miRNA:   3'- aCGGCGACGaGugGAGCCa-CGU---CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.