Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26773 | 3' | -54.1 | NC_005808.1 | + | 37718 | 0.66 | 0.721538 |
Target: 5'- aCGAGGCc-GCCGUcGCCGCgcUGGg-- -3' miRNA: 3'- aGUUCCGuaUGGCA-CGGCGa-ACCacc -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 2033 | 0.66 | 0.71055 |
Target: 5'- ---cGGCAUACCG-GCCGCcucGGcgacgaUGGa -3' miRNA: 3'- aguuCCGUAUGGCaCGGCGaa-CC------ACC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 23873 | 0.66 | 0.71055 |
Target: 5'- uUCGAcGGCAUcCCGUGCCGCc------ -3' miRNA: 3'- -AGUU-CCGUAuGGCACGGCGaaccacc -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 8746 | 0.66 | 0.71055 |
Target: 5'- cCAGGGCGcGCgcguauucaCGUGCCGCUUcGGg-- -3' miRNA: 3'- aGUUCCGUaUG---------GCACGGCGAA-CCacc -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 18319 | 0.67 | 0.665906 |
Target: 5'- aCAcGGCAguaGCgGcGCaGCUUGGUGGg -3' miRNA: 3'- aGUuCCGUa--UGgCaCGgCGAACCACC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 16935 | 0.67 | 0.654632 |
Target: 5'- gUAGGGCAcgGCgccguccagcagCGUGCCGCgUUGGUauGGa -3' miRNA: 3'- aGUUCCGUa-UG------------GCACGGCG-AACCA--CC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 320 | 0.67 | 0.63203 |
Target: 5'- cCAGGGCGUGCCGUaCCGgg-GGUc- -3' miRNA: 3'- aGUUCCGUAUGGCAcGGCgaaCCAcc -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 9024 | 0.68 | 0.598152 |
Target: 5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3' miRNA: 3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 9072 | 0.68 | 0.598152 |
Target: 5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3' miRNA: 3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 9120 | 0.68 | 0.598152 |
Target: 5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3' miRNA: 3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 9168 | 0.68 | 0.598152 |
Target: 5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3' miRNA: 3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 9216 | 0.68 | 0.598152 |
Target: 5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3' miRNA: 3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 9312 | 0.68 | 0.598152 |
Target: 5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3' miRNA: 3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 9360 | 0.68 | 0.598152 |
Target: 5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3' miRNA: 3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 9264 | 0.68 | 0.598152 |
Target: 5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3' miRNA: 3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 1980 | 0.69 | 0.531458 |
Target: 5'- -gAAGGCAcGCUGUagGCCGCgaGGUcGGa -3' miRNA: 3'- agUUCCGUaUGGCA--CGGCGaaCCA-CC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 24639 | 0.69 | 0.509792 |
Target: 5'- aCAuGGCGUGCCGgcggGCCaGgaUGGUGu -3' miRNA: 3'- aGUuCCGUAUGGCa---CGG-CgaACCACc -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 29260 | 0.7 | 0.457385 |
Target: 5'- aUAAGGCcgGCCgGUGUCGg--GGUGGa -3' miRNA: 3'- aGUUCCGuaUGG-CACGGCgaaCCACC- -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 4665 | 0.71 | 0.417614 |
Target: 5'- gUCAAGGUcgAUGCCGUagguaGCCGCcccGGUGa -3' miRNA: 3'- -AGUUCCG--UAUGGCA-----CGGCGaa-CCACc -5' |
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26773 | 3' | -54.1 | NC_005808.1 | + | 40570 | 0.71 | 0.398535 |
Target: 5'- cCGAGGCG-GCCGguaUGCCGgUgcUGGUGGc -3' miRNA: 3'- aGUUCCGUaUGGC---ACGGCgA--ACCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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