Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26774 | 3' | -49.6 | NC_005808.1 | + | 473 | 0.67 | 0.865394 |
Target: 5'- ----gGCGCUGuCGCggUCGGAUGc- -3' miRNA: 3'- uuauaCGCGACuGCGuaAGUCUACcc -5' |
|||||||
26774 | 3' | -49.6 | NC_005808.1 | + | 36046 | 0.68 | 0.818744 |
Target: 5'- --gAUGCGCUGACGCcuggcgAUUCGGGc--- -3' miRNA: 3'- uuaUACGCGACUGCG------UAAGUCUaccc -5' |
|||||||
26774 | 3' | -49.6 | NC_005808.1 | + | 7179 | 0.7 | 0.686999 |
Target: 5'- ----cGCGCUGACGCccugacgCAGccGGGa -3' miRNA: 3'- uuauaCGCGACUGCGuaa----GUCuaCCC- -5' |
|||||||
26774 | 3' | -49.6 | NC_005808.1 | + | 11874 | 0.84 | 0.122546 |
Target: 5'- --aAUGCGUUGACGCAUUCcGAUGGa -3' miRNA: 3'- uuaUACGCGACUGCGUAAGuCUACCc -5' |
|||||||
26774 | 3' | -49.6 | NC_005808.1 | + | 31751 | 0.87 | 0.072925 |
Target: 5'- aAAUAUGCGCUGACGCAUUgAcAUGGGc -3' miRNA: 3'- -UUAUACGCGACUGCGUAAgUcUACCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home