Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26775 | 3' | -55.4 | NC_005808.1 | + | 39023 | 0.74 | 0.231577 |
Target: 5'- uGACCCGGCGCG-UCGCugAAauUUAUGc -3' miRNA: 3'- cUUGGGCCGCGCgAGCGugUU--GAUAC- -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 38559 | 0.74 | 0.219437 |
Target: 5'- -cGCCCGGCuGCGCUCgacccGCGCGGC-AUGa -3' miRNA: 3'- cuUGGGCCG-CGCGAG-----CGUGUUGaUAC- -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 38440 | 0.66 | 0.615296 |
Target: 5'- cGACCaCGGCGCGCaaggUGgGCGGCUu-- -3' miRNA: 3'- cUUGG-GCCGCGCGa---GCgUGUUGAuac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 38211 | 0.68 | 0.46301 |
Target: 5'- aGGCCCGGCGCGacggCGCcUGGCUGc- -3' miRNA: 3'- cUUGGGCCGCGCga--GCGuGUUGAUac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 38006 | 0.67 | 0.526411 |
Target: 5'- uGACCUGG-GCGgcaUCGCAUAACUAg- -3' miRNA: 3'- cUUGGGCCgCGCg--AGCGUGUUGAUac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 37927 | 0.67 | 0.559328 |
Target: 5'- -uAUCCGGCGCGCUggugccCGC-CAACa--- -3' miRNA: 3'- cuUGGGCCGCGCGA------GCGuGUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 36860 | 0.75 | 0.171367 |
Target: 5'- -uGCCCGGCGCGCU-GgGCGAuCUGUGc -3' miRNA: 3'- cuUGGGCCGCGCGAgCgUGUU-GAUAC- -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 34827 | 0.66 | 0.615296 |
Target: 5'- uGGACgCCGGCGCagaUCGCGCcgguGCUGc- -3' miRNA: 3'- -CUUG-GGCCGCGcg-AGCGUGu---UGAUac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 33377 | 0.7 | 0.385213 |
Target: 5'- -cGCCgGGCGCGC-CGCAgAACg--- -3' miRNA: 3'- cuUGGgCCGCGCGaGCGUgUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 32043 | 1.07 | 0.000876 |
Target: 5'- uGAACCCGGCGCGCUCGCACAACUAUGc -3' miRNA: 3'- -CUUGGGCCGCGCGAGCGUGUUGAUAC- -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 31651 | 0.7 | 0.394459 |
Target: 5'- --cCCCGGCuGuCGC-CGCGCAACUGc- -3' miRNA: 3'- cuuGGGCCG-C-GCGaGCGUGUUGAUac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 31232 | 0.73 | 0.244276 |
Target: 5'- aGAAcCCCGGCGCGCg-GCcCAGCUAc- -3' miRNA: 3'- -CUU-GGGCCGCGCGagCGuGUUGAUac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 29427 | 0.66 | 0.604033 |
Target: 5'- -uGCCCa-CGCGCUCGCACGucGCg--- -3' miRNA: 3'- cuUGGGccGCGCGAGCGUGU--UGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 29309 | 0.68 | 0.47331 |
Target: 5'- --cCCCGGCGCGCU-GCAauCGGCgcUGa -3' miRNA: 3'- cuuGGGCCGCGCGAgCGU--GUUGauAC- -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 28757 | 0.67 | 0.537309 |
Target: 5'- cAGCgCGGUGCGCUucucggcgCGCACGGCg--- -3' miRNA: 3'- cUUGgGCCGCGCGA--------GCGUGUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 28312 | 0.74 | 0.202251 |
Target: 5'- aGAACUCGGCGCGCUCgGCGuCGgACUcgAUGg -3' miRNA: 3'- -CUUGGGCCGCGCGAG-CGU-GU-UGA--UAC- -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 27887 | 0.68 | 0.46301 |
Target: 5'- --uCuuGGCGUGCUCGCcCAGCa--- -3' miRNA: 3'- cuuGggCCGCGCGAGCGuGUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 26272 | 0.67 | 0.559328 |
Target: 5'- cGGCCUGGuCG-GCUCGCGCAucgcGCgcgAUGg -3' miRNA: 3'- cUUGGGCC-GCgCGAGCGUGU----UGa--UAC- -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 26029 | 0.67 | 0.548284 |
Target: 5'- --gUCCGGCGCGUcgCGCuACAACg--- -3' miRNA: 3'- cuuGGGCCGCGCGa-GCG-UGUUGauac -5' |
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26775 | 3' | -55.4 | NC_005808.1 | + | 23131 | 0.68 | 0.494247 |
Target: 5'- -cACCUGGCGCaa--GCugAACUAUGg -3' miRNA: 3'- cuUGGGCCGCGcgagCGugUUGAUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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