miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26775 3' -55.4 NC_005808.1 + 2743 0.72 0.293308
Target:  5'- cGGCCCGGCGCuGCUCGgGCGugccgaccACUGc- -3'
miRNA:   3'- cUUGGGCCGCG-CGAGCgUGU--------UGAUac -5'
26775 3' -55.4 NC_005808.1 + 37927 0.67 0.559328
Target:  5'- -uAUCCGGCGCGCUggugccCGC-CAACa--- -3'
miRNA:   3'- cuUGGGCCGCGCGA------GCGuGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 12976 0.66 0.581593
Target:  5'- aAGCCCGGCcacaaGCGCccggCGCugGACa--- -3'
miRNA:   3'- cUUGGGCCG-----CGCGa---GCGugUUGauac -5'
26775 3' -55.4 NC_005808.1 + 7361 0.66 0.637858
Target:  5'- cGACCuCGGCGuCGUUCGUcCAGCg--- -3'
miRNA:   3'- cUUGG-GCCGC-GCGAGCGuGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 29309 0.68 0.47331
Target:  5'- --cCCCGGCGCGCU-GCAauCGGCgcUGa -3'
miRNA:   3'- cuuGGGCCGCGCGAgCGU--GUUGauAC- -5'
26775 3' -55.4 NC_005808.1 + 18522 0.68 0.494247
Target:  5'- -uGCCCcGCGCGgUCGcCGCuACUGUGc -3'
miRNA:   3'- cuUGGGcCGCGCgAGC-GUGuUGAUAC- -5'
26775 3' -55.4 NC_005808.1 + 38006 0.67 0.526411
Target:  5'- uGACCUGG-GCGgcaUCGCAUAACUAg- -3'
miRNA:   3'- cUUGGGCCgCGCg--AGCGUGUUGAUac -5'
26775 3' -55.4 NC_005808.1 + 20270 0.79 0.105594
Target:  5'- aGAACUCGGCGCGUUCgGCACGGCc--- -3'
miRNA:   3'- -CUUGGGCCGCGCGAG-CGUGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 19083 0.75 0.171367
Target:  5'- -cGCCUggaaGGCGCGCUCGCGgAACUGc- -3'
miRNA:   3'- cuUGGG----CCGCGCGAGCGUgUUGAUac -5'
26775 3' -55.4 NC_005808.1 + 5746 0.67 0.548284
Target:  5'- -cGCCCaGCGCGC-CGgGCAGCg--- -3'
miRNA:   3'- cuUGGGcCGCGCGaGCgUGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 8735 0.67 0.548284
Target:  5'- -uGCCCGGCGgGCgcggCGCuaccguCAAC-AUGg -3'
miRNA:   3'- cuUGGGCCGCgCGa---GCGu-----GUUGaUAC- -5'
26775 3' -55.4 NC_005808.1 + 12523 0.67 0.537309
Target:  5'- -cGCCCGG-GCGC-CGCACAAa---- -3'
miRNA:   3'- cuUGGGCCgCGCGaGCGUGUUgauac -5'
26775 3' -55.4 NC_005808.1 + 15180 0.72 0.308661
Target:  5'- cGGGCgCGGUGCGCcaggCGCGCGACg--- -3'
miRNA:   3'- -CUUGgGCCGCGCGa---GCGUGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 15138 0.67 0.548284
Target:  5'- -uGCgCGGCGCGCUgGCAuacCAGCg--- -3'
miRNA:   3'- cuUGgGCCGCGCGAgCGU---GUUGauac -5'
26775 3' -55.4 NC_005808.1 + 33377 0.7 0.385213
Target:  5'- -cGCCgGGCGCGC-CGCAgAACg--- -3'
miRNA:   3'- cuUGGgCCGCGCGaGCGUgUUGauac -5'
26775 3' -55.4 NC_005808.1 + 17517 0.67 0.526411
Target:  5'- -cGCCgGGCGCGCUgCGCugGgugGCgAUGc -3'
miRNA:   3'- cuUGGgCCGCGCGA-GCGugU---UGaUAC- -5'
26775 3' -55.4 NC_005808.1 + 26029 0.67 0.548284
Target:  5'- --gUCCGGCGCGUcgCGCuACAACg--- -3'
miRNA:   3'- cuuGGGCCGCGCGa-GCG-UGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 15357 0.66 0.581593
Target:  5'- aGAGCCUGGgGCGC-CGgCugGACa--- -3'
miRNA:   3'- -CUUGGGCCgCGCGaGC-GugUUGauac -5'
26775 3' -55.4 NC_005808.1 + 31651 0.7 0.394459
Target:  5'- --cCCCGGCuGuCGC-CGCGCAACUGc- -3'
miRNA:   3'- cuuGGGCCG-C-GCGaGCGUGUUGAUac -5'
26775 3' -55.4 NC_005808.1 + 23131 0.68 0.494247
Target:  5'- -cACCUGGCGCaa--GCugAACUAUGg -3'
miRNA:   3'- cuUGGGCCGCGcgagCGugUUGAUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.