miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26775 5' -60.7 NC_005808.1 + 3283 0.66 0.356741
Target:  5'- --aGUCGGCCCgUGCCuuuGCGauGCCGg -3'
miRNA:   3'- gagUAGCCGGG-GCGGu--UGUgcCGGCg -5'
26775 5' -60.7 NC_005808.1 + 6370 0.66 0.355912
Target:  5'- ----cCGGCCCaCGUCGGCAaucaggcgcaggcCGGCCGg -3'
miRNA:   3'- gaguaGCCGGG-GCGGUUGU-------------GCCGGCg -5'
26775 5' -60.7 NC_005808.1 + 5569 0.67 0.348503
Target:  5'- aUCGaCGGC---GCCAACGCuGGCCGCc -3'
miRNA:   3'- gAGUaGCCGgggCGGUUGUG-CCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 37530 0.67 0.348503
Target:  5'- --gGUCGGCaaUGCCGACaacaucaaugcaGCGGUCGCc -3'
miRNA:   3'- gagUAGCCGggGCGGUUG------------UGCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 20346 0.67 0.348503
Target:  5'- ----aCGGCCggcgaauaCGCCAuCGCGGCCGa -3'
miRNA:   3'- gaguaGCCGGg-------GCGGUuGUGCCGGCg -5'
26775 5' -60.7 NC_005808.1 + 41720 0.67 0.348503
Target:  5'- -cCAUgcUGGCCCUGCuguuCAACuCGGCuCGCa -3'
miRNA:   3'- gaGUA--GCCGGGGCG----GUUGuGCCG-GCG- -5'
26775 5' -60.7 NC_005808.1 + 4507 0.67 0.348503
Target:  5'- uCUCAcgggCGGCgCCCGUgAACguggcgugcuggGCGGUCGUg -3'
miRNA:   3'- -GAGUa---GCCG-GGGCGgUUG------------UGCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 13032 0.67 0.348503
Target:  5'- -gCGaCGGCCUCGUCAucGCguugcuugaguGCGGCCGUc -3'
miRNA:   3'- gaGUaGCCGGGGCGGU--UG-----------UGCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 32619 0.67 0.340401
Target:  5'- gUCAagGGCCgCGaCGcCGCGGUCGCu -3'
miRNA:   3'- gAGUagCCGGgGCgGUuGUGCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 8982 0.67 0.340401
Target:  5'- -gCAgcggUGGCCgugCCGCCAGCgguGGCCGUg -3'
miRNA:   3'- gaGUa---GCCGG---GGCGGUUGug-CCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 41869 0.67 0.340401
Target:  5'- gUCAUCcGCCaggCGCuCGACuuGGCCGUg -3'
miRNA:   3'- gAGUAGcCGGg--GCG-GUUGugCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 7652 0.67 0.340401
Target:  5'- -aCGcCGGCUCCuuGCCGuACACGcGCCGUu -3'
miRNA:   3'- gaGUaGCCGGGG--CGGU-UGUGC-CGGCG- -5'
26775 5' -60.7 NC_005808.1 + 25956 0.67 0.339598
Target:  5'- cCUCGUCGGCCggcaCCugcaCCAACaaccucuucaccaACGGCgGCg -3'
miRNA:   3'- -GAGUAGCCGG----GGc---GGUUG-------------UGCCGgCG- -5'
26775 5' -60.7 NC_005808.1 + 29733 0.67 0.332436
Target:  5'- aUCAaaUCGGCCaCGCCGuagaacucgGCcuCGGCUGCu -3'
miRNA:   3'- gAGU--AGCCGGgGCGGU---------UGu-GCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 27451 0.67 0.332436
Target:  5'- -----aGGCCCUggcgcugguauGCCAGCGCG-CCGCg -3'
miRNA:   3'- gaguagCCGGGG-----------CGGUUGUGCcGGCG- -5'
26775 5' -60.7 NC_005808.1 + 1125 0.67 0.331647
Target:  5'- -gCAUCGGCCcgguguaaCCGUUAGCucgcgcuACGGCgGCg -3'
miRNA:   3'- gaGUAGCCGG--------GGCGGUUG-------UGCCGgCG- -5'
26775 5' -60.7 NC_005808.1 + 11564 0.67 0.324609
Target:  5'- -aCGUUGGCCCgCGCgAuuGCcuCGGCCGg -3'
miRNA:   3'- gaGUAGCCGGG-GCGgU--UGu-GCCGGCg -5'
26775 5' -60.7 NC_005808.1 + 13626 0.67 0.324609
Target:  5'- -gCAUCGGUagCGgcagcaaguCCGGCGCGGCCGUc -3'
miRNA:   3'- gaGUAGCCGggGC---------GGUUGUGCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 29579 0.67 0.324609
Target:  5'- gUCAggUCGGCCgCGCCcaggcGCGCGGuUUGCc -3'
miRNA:   3'- gAGU--AGCCGGgGCGGu----UGUGCC-GGCG- -5'
26775 5' -60.7 NC_005808.1 + 33992 0.67 0.324609
Target:  5'- ----cCGGCCacgccuaCGCCAucccCACGGUCGCc -3'
miRNA:   3'- gaguaGCCGGg------GCGGUu---GUGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.