miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 3' -56 NC_005808.1 + 40591 0.66 0.582974
Target:  5'- --uCGCCAGCGa---GCGCcugGGCCUCAa -3'
miRNA:   3'- uuuGUGGUCGCgcaaCGCG---CUGGAGU- -5'
26777 3' -56 NC_005808.1 + 36860 0.68 0.46387
Target:  5'- -uGC-CCGGCGCGcUGgGCGAUCUg- -3'
miRNA:   3'- uuUGuGGUCGCGCaACgCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 35930 0.67 0.516695
Target:  5'- uGAACAUCGGCGUG--GCGCaGACCa-- -3'
miRNA:   3'- -UUUGUGGUCGCGCaaCGCG-CUGGagu -5'
26777 3' -56 NC_005808.1 + 34981 0.66 0.527557
Target:  5'- -cACGuguCCGGCGC--UGCGCGACCa-- -3'
miRNA:   3'- uuUGU---GGUCGCGcaACGCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 34484 0.73 0.20767
Target:  5'- cAACGCCGGcCGCGcgGUGCagGGCCUCAa -3'
miRNA:   3'- uUUGUGGUC-GCGCaaCGCG--CUGGAGU- -5'
26777 3' -56 NC_005808.1 + 34014 0.68 0.443539
Target:  5'- cAGCACCAGgcCGCac-GCGCGGCCUa- -3'
miRNA:   3'- uUUGUGGUC--GCGcaaCGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 33945 0.69 0.404437
Target:  5'- -uGCACaCAGCGaGUacgGCGCGGCCUgGg -3'
miRNA:   3'- uuUGUG-GUCGCgCAa--CGCGCUGGAgU- -5'
26777 3' -56 NC_005808.1 + 32290 1.06 0.000832
Target:  5'- aAAACACCAGCGCGUUGCGCGACCUCAu -3'
miRNA:   3'- -UUUGUGGUCGCGCAACGCGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 32127 0.69 0.367583
Target:  5'- ---gGCCGGUGC--UGCGCGACUUCc -3'
miRNA:   3'- uuugUGGUCGCGcaACGCGCUGGAGu -5'
26777 3' -56 NC_005808.1 + 31992 0.75 0.157263
Target:  5'- cGACGCCAGCGUccUGUGCGAaacCCUCGa -3'
miRNA:   3'- uUUGUGGUCGCGcaACGCGCU---GGAGU- -5'
26777 3' -56 NC_005808.1 + 31510 0.66 0.527557
Target:  5'- --cCGCCGGCGUGcUGCuG-GGCCUCGc -3'
miRNA:   3'- uuuGUGGUCGCGCaACG-CgCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 31091 0.66 0.57177
Target:  5'- -cACGCCAGCGCag-GCGCuGCCc-- -3'
miRNA:   3'- uuUGUGGUCGCGcaaCGCGcUGGagu -5'
26777 3' -56 NC_005808.1 + 30463 0.66 0.57177
Target:  5'- gAAGCG-CAGCGCGUgGCGCGucgcGCCa-- -3'
miRNA:   3'- -UUUGUgGUCGCGCAaCGCGC----UGGagu -5'
26777 3' -56 NC_005808.1 + 29587 0.68 0.414008
Target:  5'- --uCGCCAcUGCGcUGCGCGGCCUg- -3'
miRNA:   3'- uuuGUGGUcGCGCaACGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 29462 0.66 0.549525
Target:  5'- uGGCACCAG-GCGacgaagcGCGCGGCCa-- -3'
miRNA:   3'- uUUGUGGUCgCGCaa-----CGCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 29414 0.67 0.516695
Target:  5'- cAACGCCGGCcaaggGCGcccaGCGCGGCCg-- -3'
miRNA:   3'- uUUGUGGUCG-----CGCaa--CGCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 28747 0.66 0.560617
Target:  5'- uGGCAucguCCAGCGCGgUGCGCu-UCUCGg -3'
miRNA:   3'- uUUGU----GGUCGCGCaACGCGcuGGAGU- -5'
26777 3' -56 NC_005808.1 + 28680 0.71 0.27862
Target:  5'- --uCGCCAGCGCGgcGCGCcACgUCGu -3'
miRNA:   3'- uuuGUGGUCGCGCaaCGCGcUGgAGU- -5'
26777 3' -56 NC_005808.1 + 27742 0.68 0.443539
Target:  5'- aAGGCGcCCAGCGUGcgGCGCuGGCCg-- -3'
miRNA:   3'- -UUUGU-GGUCGCGCaaCGCG-CUGGagu -5'
26777 3' -56 NC_005808.1 + 27485 0.68 0.443539
Target:  5'- -cGCACCA-CGCGaggaUGCcgGCGGCCUCGg -3'
miRNA:   3'- uuUGUGGUcGCGCa---ACG--CGCUGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.