miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 3' -56 NC_005808.1 + 13017 0.69 0.376578
Target:  5'- --cCGCgCAGCGCaGUgGCGaCGGCCUCGu -3'
miRNA:   3'- uuuGUG-GUCGCG-CAaCGC-GCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 13161 0.66 0.57177
Target:  5'- gGAGCACCugGGCGCGacGUGCGAgCg-- -3'
miRNA:   3'- -UUUGUGG--UCGCGCaaCGCGCUgGagu -5'
26777 3' -56 NC_005808.1 + 13250 0.67 0.521029
Target:  5'- --cCACCGGCGCGUgguucgaggacuugGCcgGCGACCg-- -3'
miRNA:   3'- uuuGUGGUCGCGCAa-------------CG--CGCUGGagu -5'
26777 3' -56 NC_005808.1 + 13950 0.66 0.560617
Target:  5'- cGGCACCGaucuggcacuGCGCGggaacugGC-CGGCCUCAu -3'
miRNA:   3'- uUUGUGGU----------CGCGCaa-----CGcGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 14758 0.67 0.484679
Target:  5'- uGAGCAgCGGCGCGgccgGCGCcACCgcgggCAg -3'
miRNA:   3'- -UUUGUgGUCGCGCaa--CGCGcUGGa----GU- -5'
26777 3' -56 NC_005808.1 + 14806 0.66 0.549525
Target:  5'- -uGCugCGGCuGCGcgGCGCGcGCUUCGu -3'
miRNA:   3'- uuUGugGUCG-CGCaaCGCGC-UGGAGU- -5'
26777 3' -56 NC_005808.1 + 14848 0.7 0.324863
Target:  5'- cGGACGagggCAGCGaGUUGCGCGaggGCCUCAu -3'
miRNA:   3'- -UUUGUg---GUCGCgCAACGCGC---UGGAGU- -5'
26777 3' -56 NC_005808.1 + 14888 0.66 0.527557
Target:  5'- cAugACCGGCGgcgagccgcugcCGgcGCGCGGCCUg- -3'
miRNA:   3'- uUugUGGUCGC------------GCaaCGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 17402 0.72 0.244215
Target:  5'- ---gGCCAGCG-GUcGCGCGugCUCAu -3'
miRNA:   3'- uuugUGGUCGCgCAaCGCGCugGAGU- -5'
26777 3' -56 NC_005808.1 + 17598 0.68 0.423718
Target:  5'- uAAACGgCuGCGCGUUGuCGauacCGGCCUCGa -3'
miRNA:   3'- -UUUGUgGuCGCGCAAC-GC----GCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 18036 0.68 0.443539
Target:  5'- cGugGCCGGCcucgccaucgccGCGcUGCGCGACCa-- -3'
miRNA:   3'- uUugUGGUCG------------CGCaACGCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 18061 0.74 0.186011
Target:  5'- --uUACCGGCGCGggGUGCGugCUgGg -3'
miRNA:   3'- uuuGUGGUCGCGCaaCGCGCugGAgU- -5'
26777 3' -56 NC_005808.1 + 19143 0.71 0.301057
Target:  5'- -cACGCCGGCGUGUacGCGCGAaCCa-- -3'
miRNA:   3'- uuUGUGGUCGCGCAa-CGCGCU-GGagu -5'
26777 3' -56 NC_005808.1 + 20060 0.76 0.125192
Target:  5'- cAACACCGgcacgcGCGCGcUGCGCGugCUCGc -3'
miRNA:   3'- uUUGUGGU------CGCGCaACGCGCugGAGU- -5'
26777 3' -56 NC_005808.1 + 20292 0.67 0.505924
Target:  5'- -cGCACCaguAGCGgGUUGCucgGCGGCCg-- -3'
miRNA:   3'- uuUGUGG---UCGCgCAACG---CGCUGGagu -5'
26777 3' -56 NC_005808.1 + 21159 0.71 0.30884
Target:  5'- -cGCGCCcugguucaacAGCGCGgccugcUGCGCGGCCUg- -3'
miRNA:   3'- uuUGUGG----------UCGCGCa-----ACGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 21218 0.68 0.46387
Target:  5'- cAGGC-CCAGCGCGccaUUGCGaCGAaCUCGg -3'
miRNA:   3'- -UUUGuGGUCGCGC---AACGC-GCUgGAGU- -5'
26777 3' -56 NC_005808.1 + 22864 0.66 0.57177
Target:  5'- cGGCaACCAGCccaagcaggGCGaUGCGCGgcGCCUCu -3'
miRNA:   3'- uUUG-UGGUCG---------CGCaACGCGC--UGGAGu -5'
26777 3' -56 NC_005808.1 + 23468 0.67 0.505924
Target:  5'- -cACGCCGGCGUGgaacaggUGCGCcgugggaaucucGACCUg- -3'
miRNA:   3'- uuUGUGGUCGCGCa------ACGCG------------CUGGAgu -5'
26777 3' -56 NC_005808.1 + 23679 0.86 0.025053
Target:  5'- aAAACGCCAGCGCGg-GCGcCGACCUCAu -3'
miRNA:   3'- -UUUGUGGUCGCGCaaCGC-GCUGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.