miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 3' -56 NC_005808.1 + 24736 0.73 0.225315
Target:  5'- --cCACC-GCGCc-UGCGCGGCCUCGa -3'
miRNA:   3'- uuuGUGGuCGCGcaACGCGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 4675 0.72 0.250802
Target:  5'- cGGGCACCAGCGCGccggauaGCGCGGCg--- -3'
miRNA:   3'- -UUUGUGGUCGCGCaa-----CGCGCUGgagu -5'
26777 3' -56 NC_005808.1 + 4879 0.72 0.250802
Target:  5'- -uGC-CCAGCGCGgcGacgGCGGCCUCGu -3'
miRNA:   3'- uuUGuGGUCGCGCaaCg--CGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 28680 0.71 0.27862
Target:  5'- --uCGCCAGCGCGgcGCGCcACgUCGu -3'
miRNA:   3'- uuuGUGGUCGCGCaaCGCGcUGgAGU- -5'
26777 3' -56 NC_005808.1 + 21159 0.71 0.30884
Target:  5'- -cGCGCCcugguucaacAGCGCGgccugcUGCGCGGCCUg- -3'
miRNA:   3'- uuUGUGG----------UCGCGCa-----ACGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 9870 0.7 0.350042
Target:  5'- uGGCACCGGCGCGcUGCuucuCGGCCa-- -3'
miRNA:   3'- uUUGUGGUCGCGCaACGc---GCUGGagu -5'
26777 3' -56 NC_005808.1 + 12392 0.69 0.376578
Target:  5'- cGAUGCCuGCGCGcUUGUauGCGGCCUUg -3'
miRNA:   3'- uUUGUGGuCGCGC-AACG--CGCUGGAGu -5'
26777 3' -56 NC_005808.1 + 13017 0.69 0.376578
Target:  5'- --cCGCgCAGCGCaGUgGCGaCGGCCUCGu -3'
miRNA:   3'- uuuGUG-GUCGCG-CAaCGC-GCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 26005 0.67 0.495249
Target:  5'- cAACACCAuCGCGUgGU-CGGCCUCGu -3'
miRNA:   3'- uUUGUGGUcGCGCAaCGcGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 9521 0.67 0.505924
Target:  5'- ---gGCCGcCGCGUcgcUGCGCGACC-CGa -3'
miRNA:   3'- uuugUGGUcGCGCA---ACGCGCUGGaGU- -5'
26777 3' -56 NC_005808.1 + 12238 0.67 0.505924
Target:  5'- cAGCAgCGGCGgGUUcucGCGCGACgaCAa -3'
miRNA:   3'- uUUGUgGUCGCgCAA---CGCGCUGgaGU- -5'
26777 3' -56 NC_005808.1 + 10494 0.67 0.516695
Target:  5'- cAGCgGCCAGgGCGUUGagcaaCGCGGCCg-- -3'
miRNA:   3'- uUUG-UGGUCgCGCAAC-----GCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 26533 0.67 0.516695
Target:  5'- cGGCGCCGcGCGCGgcggccacgUGCGCGaacugGCCUaCAa -3'
miRNA:   3'- uUUGUGGU-CGCGCa--------ACGCGC-----UGGA-GU- -5'
26777 3' -56 NC_005808.1 + 35930 0.67 0.516695
Target:  5'- uGAACAUCGGCGUG--GCGCaGACCa-- -3'
miRNA:   3'- -UUUGUGGUCGCGCaaCGCG-CUGGagu -5'
26777 3' -56 NC_005808.1 + 29414 0.67 0.516695
Target:  5'- cAACGCCGGCcaaggGCGcccaGCGCGGCCg-- -3'
miRNA:   3'- uUUGUGGUCG-----CGCaa--CGCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 13250 0.67 0.521029
Target:  5'- --cCACCGGCGCGUgguucgaggacuugGCcgGCGACCg-- -3'
miRNA:   3'- uuuGUGGUCGCGCAa-------------CG--CGCUGGagu -5'
26777 3' -56 NC_005808.1 + 14888 0.66 0.527557
Target:  5'- cAugACCGGCGgcgagccgcugcCGgcGCGCGGCCUg- -3'
miRNA:   3'- uUugUGGUCGC------------GCaaCGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 12551 0.66 0.542903
Target:  5'- cGGCACCAGUGCGaauacguggUguggggcaccaaggGCGCGGCCgugCAg -3'
miRNA:   3'- uUUGUGGUCGCGC---------Aa-------------CGCGCUGGa--GU- -5'
26777 3' -56 NC_005808.1 + 14806 0.66 0.549525
Target:  5'- -uGCugCGGCuGCGcgGCGCGcGCUUCGu -3'
miRNA:   3'- uuUGugGUCG-CGCaaCGCGC-UGGAGU- -5'
26777 3' -56 NC_005808.1 + 13950 0.66 0.560617
Target:  5'- cGGCACCGaucuggcacuGCGCGggaacugGC-CGGCCUCAu -3'
miRNA:   3'- uUUGUGGU----------CGCGCaa-----CGcGCUGGAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.