miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 3' -56 NC_005808.1 + 29414 0.67 0.516695
Target:  5'- cAACGCCGGCcaaggGCGcccaGCGCGGCCg-- -3'
miRNA:   3'- uUUGUGGUCG-----CGCaa--CGCGCUGGagu -5'
26777 3' -56 NC_005808.1 + 13250 0.67 0.521029
Target:  5'- --cCACCGGCGCGUgguucgaggacuugGCcgGCGACCg-- -3'
miRNA:   3'- uuuGUGGUCGCGCAa-------------CG--CGCUGGagu -5'
26777 3' -56 NC_005808.1 + 14888 0.66 0.527557
Target:  5'- cAugACCGGCGgcgagccgcugcCGgcGCGCGGCCUg- -3'
miRNA:   3'- uUugUGGUCGC------------GCaaCGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 12551 0.66 0.542903
Target:  5'- cGGCACCAGUGCGaauacguggUguggggcaccaaggGCGCGGCCgugCAg -3'
miRNA:   3'- uUUGUGGUCGCGC---------Aa-------------CGCGCUGGa--GU- -5'
26777 3' -56 NC_005808.1 + 14806 0.66 0.549525
Target:  5'- -uGCugCGGCuGCGcgGCGCGcGCUUCGu -3'
miRNA:   3'- uuUGugGUCG-CGCaaCGCGC-UGGAGU- -5'
26777 3' -56 NC_005808.1 + 13950 0.66 0.560617
Target:  5'- cGGCACCGaucuggcacuGCGCGggaacugGC-CGGCCUCAu -3'
miRNA:   3'- uUUGUGGU----------CGCGCaa-----CGcGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 24018 0.66 0.560617
Target:  5'- cGGACgGCCAGgccgucacCGCGa-GCGCGGCCUCc -3'
miRNA:   3'- -UUUG-UGGUC--------GCGCaaCGCGCUGGAGu -5'
26777 3' -56 NC_005808.1 + 22864 0.66 0.57177
Target:  5'- cGGCaACCAGCccaagcaggGCGaUGCGCGgcGCCUCu -3'
miRNA:   3'- uUUG-UGGUCG---------CGCaACGCGC--UGGAGu -5'
26777 3' -56 NC_005808.1 + 13161 0.66 0.57177
Target:  5'- gGAGCACCugGGCGCGacGUGCGAgCg-- -3'
miRNA:   3'- -UUUGUGG--UCGCGCaaCGCGCUgGagu -5'
26777 3' -56 NC_005808.1 + 30463 0.66 0.57177
Target:  5'- gAAGCG-CAGCGCGUgGCGCGucgcGCCa-- -3'
miRNA:   3'- -UUUGUgGUCGCGCAaCGCGC----UGGagu -5'
26777 3' -56 NC_005808.1 + 31091 0.66 0.57177
Target:  5'- -cACGCCAGCGCag-GCGCuGCCc-- -3'
miRNA:   3'- uuUGUGGUCGCGcaaCGCGcUGGagu -5'
26777 3' -56 NC_005808.1 + 40591 0.66 0.582974
Target:  5'- --uCGCCAGCGa---GCGCcugGGCCUCAa -3'
miRNA:   3'- uuuGUGGUCGCgcaaCGCG---CUGGAGU- -5'
26777 3' -56 NC_005808.1 + 12381 0.74 0.175947
Target:  5'- --uCGCCgAGUGCG-UGCGCGugCUCAa -3'
miRNA:   3'- uuuGUGG-UCGCGCaACGCGCugGAGU- -5'
26777 3' -56 NC_005808.1 + 20060 0.76 0.125192
Target:  5'- cAACACCGgcacgcGCGCGcUGCGCGugCUCGc -3'
miRNA:   3'- uUUGUGGU------CGCGCaACGCGCugGAGU- -5'
26777 3' -56 NC_005808.1 + 12472 0.79 0.088297
Target:  5'- ---gGCCGGCgGCGUguucugGCGCGGCCUCAu -3'
miRNA:   3'- uuugUGGUCG-CGCAa-----CGCGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 23679 0.86 0.025053
Target:  5'- aAAACGCCAGCGCGg-GCGcCGACCUCAu -3'
miRNA:   3'- -UUUGUGGUCGCGCaaCGC-GCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 33945 0.69 0.404437
Target:  5'- -uGCACaCAGCGaGUacgGCGCGGCCUgGg -3'
miRNA:   3'- uuUGUG-GUCGCgCAa--CGCGCUGGAgU- -5'
26777 3' -56 NC_005808.1 + 7931 0.77 0.109606
Target:  5'- cGAACACCGGCGCGaggauuuccgacagcUUGCccGUGGCCUCGg -3'
miRNA:   3'- -UUUGUGGUCGCGC---------------AACG--CGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 13017 0.69 0.376578
Target:  5'- --cCGCgCAGCGCaGUgGCGaCGGCCUCGu -3'
miRNA:   3'- uuuGUG-GUCGCG-CAaCGC-GCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 12392 0.69 0.376578
Target:  5'- cGAUGCCuGCGCGcUUGUauGCGGCCUUg -3'
miRNA:   3'- uUUGUGGuCGCGC-AACG--CGCUGGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.