miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 3' -56 NC_005808.1 + 24018 0.66 0.560617
Target:  5'- cGGACgGCCAGgccgucacCGCGa-GCGCGGCCUCc -3'
miRNA:   3'- -UUUG-UGGUC--------GCGCaaCGCGCUGGAGu -5'
26777 3' -56 NC_005808.1 + 22864 0.66 0.57177
Target:  5'- cGGCaACCAGCccaagcaggGCGaUGCGCGgcGCCUCu -3'
miRNA:   3'- uUUG-UGGUCG---------CGCaACGCGC--UGGAGu -5'
26777 3' -56 NC_005808.1 + 13161 0.66 0.57177
Target:  5'- gGAGCACCugGGCGCGacGUGCGAgCg-- -3'
miRNA:   3'- -UUUGUGG--UCGCGCaaCGCGCUgGagu -5'
26777 3' -56 NC_005808.1 + 30463 0.66 0.57177
Target:  5'- gAAGCG-CAGCGCGUgGCGCGucgcGCCa-- -3'
miRNA:   3'- -UUUGUgGUCGCGCAaCGCGC----UGGagu -5'
26777 3' -56 NC_005808.1 + 31091 0.66 0.57177
Target:  5'- -cACGCCAGCGCag-GCGCuGCCc-- -3'
miRNA:   3'- uuUGUGGUCGCGcaaCGCGcUGGagu -5'
26777 3' -56 NC_005808.1 + 40591 0.66 0.582974
Target:  5'- --uCGCCAGCGa---GCGCcugGGCCUCAa -3'
miRNA:   3'- uuuGUGGUCGCgcaaCGCG---CUGGAGU- -5'
26777 3' -56 NC_005808.1 + 32127 0.69 0.367583
Target:  5'- ---gGCCGGUGC--UGCGCGACUUCc -3'
miRNA:   3'- uuugUGGUCGCGcaACGCGCUGGAGu -5'
26777 3' -56 NC_005808.1 + 23679 0.86 0.025053
Target:  5'- aAAACGCCAGCGCGg-GCGcCGACCUCAu -3'
miRNA:   3'- -UUUGUGGUCGCGCaaCGC-GCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 12472 0.79 0.088297
Target:  5'- ---gGCCGGCgGCGUguucugGCGCGGCCUCAu -3'
miRNA:   3'- uuugUGGUCG-CGCAa-----CGCGCUGGAGU- -5'
26777 3' -56 NC_005808.1 + 20060 0.76 0.125192
Target:  5'- cAACACCGgcacgcGCGCGcUGCGCGugCUCGc -3'
miRNA:   3'- uUUGUGGU------CGCGCaACGCGCugGAGU- -5'
26777 3' -56 NC_005808.1 + 12381 0.74 0.175947
Target:  5'- --uCGCCgAGUGCG-UGCGCGugCUCAa -3'
miRNA:   3'- uuuGUGG-UCGCGCaACGCGCugGAGU- -5'
26777 3' -56 NC_005808.1 + 34484 0.73 0.20767
Target:  5'- cAACGCCGGcCGCGcgGUGCagGGCCUCAa -3'
miRNA:   3'- uUUGUGGUC-GCGCaaCGCG--CUGGAGU- -5'
26777 3' -56 NC_005808.1 + 17402 0.72 0.244215
Target:  5'- ---gGCCAGCG-GUcGCGCGugCUCAu -3'
miRNA:   3'- uuugUGGUCGCgCAaCGCGCugGAGU- -5'
26777 3' -56 NC_005808.1 + 19143 0.71 0.301057
Target:  5'- -cACGCCGGCGUGUacGCGCGAaCCa-- -3'
miRNA:   3'- uuUGUGGUCGCGCAa-CGCGCU-GGagu -5'
26777 3' -56 NC_005808.1 + 14848 0.7 0.324863
Target:  5'- cGGACGagggCAGCGaGUUGCGCGaggGCCUCAu -3'
miRNA:   3'- -UUUGUg---GUCGCgCAACGCGC---UGGAGU- -5'
26777 3' -56 NC_005808.1 + 14758 0.67 0.484679
Target:  5'- uGAGCAgCGGCGCGgccgGCGCcACCgcgggCAg -3'
miRNA:   3'- -UUUGUgGUCGCGCaa--CGCGcUGGa----GU- -5'
26777 3' -56 NC_005808.1 + 29587 0.68 0.414008
Target:  5'- --uCGCCAcUGCGcUGCGCGGCCUg- -3'
miRNA:   3'- uuuGUGGUcGCGCaACGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 27742 0.68 0.443539
Target:  5'- aAGGCGcCCAGCGUGcgGCGCuGGCCg-- -3'
miRNA:   3'- -UUUGU-GGUCGCGCaaCGCG-CUGGagu -5'
26777 3' -56 NC_005808.1 + 34014 0.68 0.443539
Target:  5'- cAGCACCAGgcCGCac-GCGCGGCCUa- -3'
miRNA:   3'- uUUGUGGUC--GCGcaaCGCGCUGGAgu -5'
26777 3' -56 NC_005808.1 + 18036 0.68 0.443539
Target:  5'- cGugGCCGGCcucgccaucgccGCGcUGCGCGACCa-- -3'
miRNA:   3'- uUugUGGUCG------------CGCaACGCGCUGGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.