miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 5' -58.6 NC_005808.1 + 36513 0.66 0.444749
Target:  5'- -gCAAGGCC-GCG-CUCGACGACUucgagGCg -3'
miRNA:   3'- uaGUUCCGGcCGCaGGGCUGUUGG-----CG- -5'
26777 5' -58.6 NC_005808.1 + 22803 0.69 0.313427
Target:  5'- gGUCAgcauGGuGCCGGacuggCCCGACuucGCCGCg -3'
miRNA:   3'- -UAGU----UC-CGGCCgca--GGGCUGu--UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 28210 0.69 0.313427
Target:  5'- uGUCcAGGUCGGCcaCgCCGACGACCacGCg -3'
miRNA:   3'- -UAGuUCCGGCCGcaG-GGCUGUUGG--CG- -5'
26777 5' -58.6 NC_005808.1 + 36837 0.68 0.329122
Target:  5'- gGUCAAGGCCcuGGCGcacucgcugCCCGGCG--CGCu -3'
miRNA:   3'- -UAGUUCCGG--CCGCa--------GGGCUGUugGCG- -5'
26777 5' -58.6 NC_005808.1 + 13308 0.68 0.33233
Target:  5'- -cCGGGGCCGGCGUuguaggcggcguaggCUuuCGGCAggucGCCGCc -3'
miRNA:   3'- uaGUUCCGGCCGCA---------------GG--GCUGU----UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 10001 0.68 0.370856
Target:  5'- gGUCGaaAGuGCCGcGCG-CCCGGCccCCGCc -3'
miRNA:   3'- -UAGU--UC-CGGC-CGCaGGGCUGuuGGCG- -5'
26777 5' -58.6 NC_005808.1 + 24501 0.67 0.383171
Target:  5'- aGUCGuagGGGCUGGCGcccacgccgaucacgUCCaggugGAUGACCGCg -3'
miRNA:   3'- -UAGU---UCCGGCCGC---------------AGGg----CUGUUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 14536 0.67 0.388532
Target:  5'- -aCGucGCCGGCG-CCgGACAACaGCg -3'
miRNA:   3'- uaGUucCGGCCGCaGGgCUGUUGgCG- -5'
26777 5' -58.6 NC_005808.1 + 8034 0.67 0.397574
Target:  5'- -aUAGGGCCGcCGUCCUuGCcGCCGUc -3'
miRNA:   3'- uaGUUCCGGCcGCAGGGcUGuUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 38207 0.69 0.305795
Target:  5'- cUCAAGGcCCGGCGcgacggcgCCUGGCugcgcauCCGCc -3'
miRNA:   3'- uAGUUCC-GGCCGCa-------GGGCUGuu-----GGCG- -5'
26777 5' -58.6 NC_005808.1 + 37512 0.69 0.29096
Target:  5'- ---uGGGCCGGcCG-CCUGuucCAACCGCa -3'
miRNA:   3'- uaguUCCGGCC-GCaGGGCu--GUUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 40352 0.69 0.283756
Target:  5'- cGUCGAacuGCCGGCcaaggCCCGGCGuuuauACCGCg -3'
miRNA:   3'- -UAGUUc--CGGCCGca---GGGCUGU-----UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 1706 0.75 0.120535
Target:  5'- uUCGccguGGGCCGGCGUgCCGGCGAggGCg -3'
miRNA:   3'- uAGU----UCCGGCCGCAgGGCUGUUggCG- -5'
26777 5' -58.6 NC_005808.1 + 27416 0.74 0.146388
Target:  5'- cGUCGcGcGCCuGGCGcaccgcgCCCGGCGGCCGCa -3'
miRNA:   3'- -UAGUuC-CGG-CCGCa------GGGCUGUUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 15397 0.73 0.172471
Target:  5'- ---cGGGCCGGCGaagaugCCgGACGACCGa -3'
miRNA:   3'- uaguUCCGGCCGCa-----GGgCUGUUGGCg -5'
26777 5' -58.6 NC_005808.1 + 35346 0.72 0.197298
Target:  5'- -aCAAGGCCGGCGacaUCGGC--CCGCg -3'
miRNA:   3'- uaGUUCCGGCCGCag-GGCUGuuGGCG- -5'
26777 5' -58.6 NC_005808.1 + 15735 0.71 0.231152
Target:  5'- -gCGAGGCCauGCG-CUCGACAuACCGCa -3'
miRNA:   3'- uaGUUCCGGc-CGCaGGGCUGU-UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 31906 0.71 0.237249
Target:  5'- cAUCGAGGCCgagugccugcGGCGUUUCGAgcGCUGCu -3'
miRNA:   3'- -UAGUUCCGG----------CCGCAGGGCUguUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 40646 0.7 0.256351
Target:  5'- -cCAGGGCCGcGCG-CUCGACcagaacCCGCa -3'
miRNA:   3'- uaGUUCCGGC-CGCaGGGCUGuu----GGCG- -5'
26777 5' -58.6 NC_005808.1 + 35933 0.7 0.262992
Target:  5'- cUCAAGGCCaacuacgacGGCuucCCCGGCAACCuGUa -3'
miRNA:   3'- uAGUUCCGG---------CCGca-GGGCUGUUGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.