miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26777 5' -58.6 NC_005808.1 + 17265 0.67 0.388532
Target:  5'- ----uGGCCGGCcuggacaaUCCCGGCGACgaGCg -3'
miRNA:   3'- uaguuCCGGCCGc-------AGGGCUGUUGg-CG- -5'
26777 5' -58.6 NC_005808.1 + 26168 0.67 0.388532
Target:  5'- uUCAAcgccGCCGGCGauuacCCCG-CGGCCGUg -3'
miRNA:   3'- uAGUUc---CGGCCGCa----GGGCuGUUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 1757 0.67 0.388532
Target:  5'- gGUCAuGGCCGGCcugcgCCUGGCGcgucggGCCGa -3'
miRNA:   3'- -UAGUuCCGGCCGca---GGGCUGU------UGGCg -5'
26777 5' -58.6 NC_005808.1 + 30045 0.67 0.388532
Target:  5'- -gCGAGGCCGGCaagaaauUCaCCGAC-GCCGa -3'
miRNA:   3'- uaGUUCCGGCCGc------AG-GGCUGuUGGCg -5'
26777 5' -58.6 NC_005808.1 + 24501 0.67 0.383171
Target:  5'- aGUCGuagGGGCUGGCGcccacgccgaucacgUCCaggugGAUGACCGCg -3'
miRNA:   3'- -UAGU---UCCGGCCGC---------------AGGg----CUGUUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 733 0.67 0.379625
Target:  5'- aGUCGAGcGCCuGGCGgaugaCCGACAcguaguuguucACCGUc -3'
miRNA:   3'- -UAGUUC-CGG-CCGCag---GGCUGU-----------UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 10001 0.68 0.370856
Target:  5'- gGUCGaaAGuGCCGcGCG-CCCGGCccCCGCc -3'
miRNA:   3'- -UAGU--UC-CGGC-CGCaGGGCUGuuGGCG- -5'
26777 5' -58.6 NC_005808.1 + 14022 0.68 0.362227
Target:  5'- -aCGcuGCCGGUGg-CCGACGugCGCg -3'
miRNA:   3'- uaGUucCGGCCGCagGGCUGUugGCG- -5'
26777 5' -58.6 NC_005808.1 + 13244 0.68 0.357116
Target:  5'- -gCAAGGCCaccGGCGcgUgguucgaggacuuggCCGGCGACCGCc -3'
miRNA:   3'- uaGUUCCGG---CCGCa-G---------------GGCUGUUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 33315 0.68 0.34539
Target:  5'- aGUCAAugcgcaGCCGGUGUaCCgGGcCGACCGCu -3'
miRNA:   3'- -UAGUUc-----CGGCCGCA-GGgCU-GUUGGCG- -5'
26777 5' -58.6 NC_005808.1 + 14767 0.68 0.34539
Target:  5'- -gCGcGGCCGGCGcCaCCGcggGCAGCgCGCg -3'
miRNA:   3'- uaGUuCCGGCCGCaG-GGC---UGUUG-GCG- -5'
26777 5' -58.6 NC_005808.1 + 4823 0.68 0.33233
Target:  5'- gGUCGGGGCCGGCGcCgUCGucgaauucacggaaaGCGGCCaGCu -3'
miRNA:   3'- -UAGUUCCGGCCGCaG-GGC---------------UGUUGG-CG- -5'
26777 5' -58.6 NC_005808.1 + 13308 0.68 0.33233
Target:  5'- -cCGGGGCCGGCGUuguaggcggcguaggCUuuCGGCAggucGCCGCc -3'
miRNA:   3'- uaGUUCCGGCCGCA---------------GG--GCUGU----UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 36837 0.68 0.329122
Target:  5'- gGUCAAGGCCcuGGCGcacucgcugCCCGGCG--CGCu -3'
miRNA:   3'- -UAGUUCCGG--CCGCa--------GGGCUGUugGCG- -5'
26777 5' -58.6 NC_005808.1 + 13769 0.69 0.321203
Target:  5'- -gCAAGuCCGGCcgcaaCCCGACGACgGCg -3'
miRNA:   3'- uaGUUCcGGCCGca---GGGCUGUUGgCG- -5'
26777 5' -58.6 NC_005808.1 + 19172 0.69 0.321203
Target:  5'- cAUCccGGCCGGCGUCgcaCUGACcGgCGCg -3'
miRNA:   3'- -UAGuuCCGGCCGCAG---GGCUGuUgGCG- -5'
26777 5' -58.6 NC_005808.1 + 28210 0.69 0.313427
Target:  5'- uGUCcAGGUCGGCcaCgCCGACGACCacGCg -3'
miRNA:   3'- -UAGuUCCGGCCGcaG-GGCUGUUGG--CG- -5'
26777 5' -58.6 NC_005808.1 + 22803 0.69 0.313427
Target:  5'- gGUCAgcauGGuGCCGGacuggCCCGACuucGCCGCg -3'
miRNA:   3'- -UAGU----UC-CGGCCgca--GGGCUGu--UGGCG- -5'
26777 5' -58.6 NC_005808.1 + 38207 0.69 0.305795
Target:  5'- cUCAAGGcCCGGCGcgacggcgCCUGGCugcgcauCCGCc -3'
miRNA:   3'- uAGUUCC-GGCCGCa-------GGGCUGuu-----GGCG- -5'
26777 5' -58.6 NC_005808.1 + 7701 0.69 0.305795
Target:  5'- cUCGGcGGCCGGCuUgCCGAUgAACUGCa -3'
miRNA:   3'- uAGUU-CCGGCCGcAgGGCUG-UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.