miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 32402 1.11 0.000763
Target:  5'- cAGCACCGAAAAAAAGCCGCGCGCCACg -3'
miRNA:   3'- -UCGUGGCUUUUUUUCGGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 18853 0.81 0.102955
Target:  5'- uGGCGCCGGcauggcgcuGCUGCGCGCCACc -3'
miRNA:   3'- -UCGUGGCUuuuuuu---CGGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 20748 0.78 0.171788
Target:  5'- uGGCGCCGu---AGAGgCGCuGCGCCGCg -3'
miRNA:   3'- -UCGUGGCuuuuUUUCgGCG-CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 27457 0.77 0.187015
Target:  5'- uGGCGCUGGuau---GCCaGCGCGCCGCg -3'
miRNA:   3'- -UCGUGGCUuuuuuuCGG-CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 17263 0.77 0.176236
Target:  5'- cGGCaaGCCGggGAuauugccguccacGAAGCCG-GCGCCGCg -3'
miRNA:   3'- -UCG--UGGCuuUU-------------UUUCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 32611 0.77 0.197817
Target:  5'- uGGC-CCGcgucAAGGGCCGCGaCGCCGCg -3'
miRNA:   3'- -UCGuGGCuuu-UUUUCGGCGC-GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 3869 0.77 0.181812
Target:  5'- aGGCGCCGucgcuguAGGCCGCGCuGCCGu -3'
miRNA:   3'- -UCGUGGCuuuuu--UUCGGCGCG-CGGUg -5'
26778 3' -53.2 NC_005808.1 + 35248 0.76 0.221057
Target:  5'- cGaCGCCGAGGucGAGGCCGCGCucaagGCCAUg -3'
miRNA:   3'- uC-GUGGCUUUu-UUUCGGCGCG-----CGGUG- -5'
26778 3' -53.2 NC_005808.1 + 37710 0.76 0.221057
Target:  5'- --gGCCGAAAAcGAGGCCGcCGuCGCCGCg -3'
miRNA:   3'- ucgUGGCUUUU-UUUCGGC-GC-GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 35518 0.76 0.221057
Target:  5'- cGCGCCGugGGuAGGCCGCGgCGUCAUg -3'
miRNA:   3'- uCGUGGCuuUUuUUCGGCGC-GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 36303 0.75 0.239982
Target:  5'- cGCACCGGAGAuAAGCCccgGCGCcccaGCCAa -3'
miRNA:   3'- uCGUGGCUUUUuUUCGG---CGCG----CGGUg -5'
26778 3' -53.2 NC_005808.1 + 18445 0.75 0.246585
Target:  5'- uGCACCGAAAacguGAcGGUCGCGgCGCCGg -3'
miRNA:   3'- uCGUGGCUUU----UUuUCGGCGC-GCGGUg -5'
26778 3' -53.2 NC_005808.1 + 18159 0.75 0.246585
Target:  5'- uGuCGCCGA-----GGCCGCGCGCgGCa -3'
miRNA:   3'- uC-GUGGCUuuuuuUCGGCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 40246 0.75 0.260241
Target:  5'- uGCagGCCGAAuuGcGGCgcaCGCGCGCCACg -3'
miRNA:   3'- uCG--UGGCUUuuUuUCG---GCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 27979 0.75 0.260241
Target:  5'- cGGCGCCGGAAGcaugGAAGCCGaCGCaCUGCu -3'
miRNA:   3'- -UCGUGGCUUUU----UUUCGGC-GCGcGGUG- -5'
26778 3' -53.2 NC_005808.1 + 9995 0.74 0.289393
Target:  5'- uGGCGgggUCGAAAGu--GCCGCGCGCC-Cg -3'
miRNA:   3'- -UCGU---GGCUUUUuuuCGGCGCGCGGuG- -5'
26778 3' -53.2 NC_005808.1 + 26336 0.74 0.304905
Target:  5'- cGCACCGcGAAcuGGCCGCGcCGCUc- -3'
miRNA:   3'- uCGUGGCuUUUuuUCGGCGC-GCGGug -5'
26778 3' -53.2 NC_005808.1 + 20492 0.74 0.302538
Target:  5'- cGCGCUGGAAcaguggguuacGGucauucacgccaucGAGCCGCGCGCCGa -3'
miRNA:   3'- uCGUGGCUUU-----------UU--------------UUCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 27680 0.73 0.312897
Target:  5'- -cCACCGuggucuuGGAAuacAGGCCGCGCGCCGg -3'
miRNA:   3'- ucGUGGCu------UUUU---UUCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 16943 0.73 0.321047
Target:  5'- cGGCGCCGucc---AGCaGCGUGCCGCg -3'
miRNA:   3'- -UCGUGGCuuuuuuUCGgCGCGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.