miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 38474 0.67 0.663033
Target:  5'- uGCGCCGGGAAGcaacGCUGCaGCGCagGCu -3'
miRNA:   3'- uCGUGGCUUUUUuu--CGGCG-CGCGg-UG- -5'
26778 3' -53.2 NC_005808.1 + 38096 0.66 0.719746
Target:  5'- aAGCGCCugu--GgcGCCGCGCGCa-- -3'
miRNA:   3'- -UCGUGGcuuuuUuuCGGCGCGCGgug -5'
26778 3' -53.2 NC_005808.1 + 37710 0.76 0.221057
Target:  5'- --gGCCGAAAAcGAGGCCGcCGuCGCCGCg -3'
miRNA:   3'- ucgUGGCUUUU-UUUCGGC-GC-GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 37500 0.66 0.697256
Target:  5'- cGCACCGGAcgcuGGGCCG-GcCGCCu- -3'
miRNA:   3'- uCGUGGCUUuuu-UUCGGCgC-GCGGug -5'
26778 3' -53.2 NC_005808.1 + 37451 0.66 0.719746
Target:  5'- gAGCAgCGAc----GGCCGCcuGCGCgGCa -3'
miRNA:   3'- -UCGUgGCUuuuuuUCGGCG--CGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 36384 0.72 0.355221
Target:  5'- aAGaccaCGAccAGGAGCCGCGCGCCGu -3'
miRNA:   3'- -UCgug-GCUuuUUUUCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 36303 0.75 0.239982
Target:  5'- cGCACCGGAGAuAAGCCccgGCGCcccaGCCAa -3'
miRNA:   3'- uCGUGGCUUUUuUUCGG---CGCG----CGGUg -5'
26778 3' -53.2 NC_005808.1 + 35845 0.68 0.594047
Target:  5'- aGGuCGCCaAGGAAAAGUgGgGCGCCAa -3'
miRNA:   3'- -UC-GUGGcUUUUUUUCGgCgCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 35518 0.76 0.221057
Target:  5'- cGCGCCGugGGuAGGCCGCGgCGUCAUg -3'
miRNA:   3'- uCGUGGCuuUUuUUCGGCGC-GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 35331 0.68 0.592902
Target:  5'- -cCGCCGAGAAgcugcacAAGGCCGgcgacaucggccCGCGCCAg -3'
miRNA:   3'- ucGUGGCUUUU-------UUUCGGC------------GCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 35248 0.76 0.221057
Target:  5'- cGaCGCCGAGGucGAGGCCGCGCucaagGCCAUg -3'
miRNA:   3'- uC-GUGGCUUUu-UUUCGGCGCG-----CGGUG- -5'
26778 3' -53.2 NC_005808.1 + 35207 0.66 0.730855
Target:  5'- aAGCuGgUGGAAGGucGCCGCGgugccCGCCGCu -3'
miRNA:   3'- -UCG-UgGCUUUUUuuCGGCGC-----GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 35165 0.66 0.730855
Target:  5'- cGCGUCGAGGAAGuGuCCGgGCGCCcGCu -3'
miRNA:   3'- uCGUGGCUUUUUUuC-GGCgCGCGG-UG- -5'
26778 3' -53.2 NC_005808.1 + 35088 0.72 0.391879
Target:  5'- cGGaCGCCGA----AAG-CGCGCGCCGCc -3'
miRNA:   3'- -UC-GUGGCUuuuuUUCgGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 35052 0.7 0.482749
Target:  5'- uGGCGCCGcAGAucGAGCaCGC-CGCCGa -3'
miRNA:   3'- -UCGUGGC-UUUuuUUCG-GCGcGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 34537 0.67 0.64004
Target:  5'- aGGCAgCGAccu--GGgCGCGCGUCAUg -3'
miRNA:   3'- -UCGUgGCUuuuuuUCgGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 34457 0.66 0.701779
Target:  5'- cAGCGCCGAcacccgcacgcccacAAccaacgccGGCCGCGCGgUGCa -3'
miRNA:   3'- -UCGUGGCU---------------UUuuu-----UCGGCGCGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 34381 0.68 0.628526
Target:  5'- cGGcCGCCGAccAgcgcgacuacGAGGCCGUGCGCgAUg -3'
miRNA:   3'- -UC-GUGGCUuuU----------UUUCGGCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 34369 0.68 0.57122
Target:  5'- -uCGCCGAcGAGGgcacGGCCGCGCacgaacugGCCGCc -3'
miRNA:   3'- ucGUGGCUuUUUU----UCGGCGCG--------CGGUG- -5'
26778 3' -53.2 NC_005808.1 + 33923 0.68 0.57122
Target:  5'- -aCGCCGA-----GGUCGCGCGgCACg -3'
miRNA:   3'- ucGUGGCUuuuuuUCGGCGCGCgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.