miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 38858 0.71 0.408187
Target:  5'- cGGCACCGAcguGcccaccaccggcguGAAcGGCaCGgGCGCCACg -3'
miRNA:   3'- -UCGUGGCU---U--------------UUUuUCG-GCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 29089 0.71 0.411109
Target:  5'- gGGCGCCGAGGucAGGCC-CGUGCgGg -3'
miRNA:   3'- -UCGUGGCUUUuuUUCGGcGCGCGgUg -5'
26778 3' -53.2 NC_005808.1 + 16584 0.71 0.415025
Target:  5'- cGCGCCGGAc-GAGGCCGaCcacgcgaugguguugGCGCCGCc -3'
miRNA:   3'- uCGUGGCUUuuUUUCGGC-G---------------CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 5125 0.71 0.420941
Target:  5'- uGGCGCCGuuGAAcuGCaaCGUGCCGCg -3'
miRNA:   3'- -UCGUGGCuuUUUuuCGgcGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 38896 0.71 0.420941
Target:  5'- uGCGCCGcau-GGGGCaGCGCGUCGCc -3'
miRNA:   3'- uCGUGGCuuuuUUUCGgCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 41004 0.71 0.420941
Target:  5'- cGCACuCGAccaccAGGAAGGCgGCG-GCCACu -3'
miRNA:   3'- uCGUG-GCU-----UUUUUUCGgCGCgCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 22593 0.71 0.430913
Target:  5'- cGGUugCGAucuugcacGAAGAAGCgcccCGCGCGCgGCa -3'
miRNA:   3'- -UCGugGCU--------UUUUUUCG----GCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 14386 0.71 0.440006
Target:  5'- cGCGCCGcgGAacguaggcguagcGAAGCUGgGCGUCGCc -3'
miRNA:   3'- uCGUGGCuuUU-------------UUUCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 18371 0.71 0.441023
Target:  5'- -uCAUCGAGAAGAucGGCCGCuCGCCGg -3'
miRNA:   3'- ucGUGGCUUUUUU--UCGGCGcGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 28011 0.71 0.451266
Target:  5'- aGGCGCUG-GAAGAAGCCGaucaugucgGCGUCGCc -3'
miRNA:   3'- -UCGUGGCuUUUUUUCGGCg--------CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 4196 0.71 0.451266
Target:  5'- gGGCGCCGAAAAGuuggaaucGGCgCGCaccGUGCCAUc -3'
miRNA:   3'- -UCGUGGCUUUUUu-------UCG-GCG---CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 28666 0.71 0.451266
Target:  5'- cGGUGCCGGc----GGCCucgccagcgcgGCGCGCCACg -3'
miRNA:   3'- -UCGUGGCUuuuuuUCGG-----------CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 27839 0.71 0.451266
Target:  5'- cGaCACCGAcac---GCUGCGCGCCAa -3'
miRNA:   3'- uC-GUGGCUuuuuuuCGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 14792 0.7 0.461638
Target:  5'- cGCGCgCGAGGAcgugcugcGGCUGCGCGgCGCg -3'
miRNA:   3'- uCGUG-GCUUUUuu------UCGGCGCGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 19078 0.7 0.461638
Target:  5'- uGCGCCGccuGGAAGgCGCGCucgcggaacuGCCGCa -3'
miRNA:   3'- uCGUGGCuuuUUUUCgGCGCG----------CGGUG- -5'
26778 3' -53.2 NC_005808.1 + 14023 0.7 0.461638
Target:  5'- cGCuGCCGGu----GGCCgacguGCGCGCCGCg -3'
miRNA:   3'- uCG-UGGCUuuuuuUCGG-----CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 29516 0.7 0.472134
Target:  5'- uGCGCgCGu--GGAGGCCGaGCGCCAa -3'
miRNA:   3'- uCGUG-GCuuuUUUUCGGCgCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 30064 0.7 0.472134
Target:  5'- uGGUGCCGGAAAuauccuuugugcGgcGcCCGgGCGCCACg -3'
miRNA:   3'- -UCGUGGCUUUU------------UuuC-GGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 18830 0.7 0.476366
Target:  5'- aAGCugCGAAuuuugcgcggcauguAGAAGGCCGgGCGgcCCAUg -3'
miRNA:   3'- -UCGugGCUU---------------UUUUUCGGCgCGC--GGUG- -5'
26778 3' -53.2 NC_005808.1 + 191 0.7 0.478489
Target:  5'- gGGCACCGucacgcuGCCGgGCGaCACg -3'
miRNA:   3'- -UCGUGGCuuuuuuuCGGCgCGCgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.