miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 1692 0.66 0.697256
Target:  5'- aGGUAgUCGAGAAAuucGCCGUGgGCCGg -3'
miRNA:   3'- -UCGU-GGCUUUUUuu-CGGCGCgCGGUg -5'
26778 3' -53.2 NC_005808.1 + 14894 0.67 0.685901
Target:  5'- cGGCGgCGAGccgcuGCCgGCGCGCgGCc -3'
miRNA:   3'- -UCGUgGCUUuuuuuCGG-CGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 12625 0.67 0.685901
Target:  5'- cGGCugCauccAGGccGUCGUGCGCCGCg -3'
miRNA:   3'- -UCGugGcuu-UUUuuCGGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 27773 0.67 0.685901
Target:  5'- cGGCAUCGAccugggcGAAGGCa--GCGCCGCc -3'
miRNA:   3'- -UCGUGGCUuu-----UUUUCGgcgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 17074 0.67 0.685901
Target:  5'- cGCGCaCGAAGGcGAAGCCG-GCGCgGu -3'
miRNA:   3'- uCGUG-GCUUUU-UUUCGGCgCGCGgUg -5'
26778 3' -53.2 NC_005808.1 + 9508 0.67 0.685901
Target:  5'- --gGgCGAGGAuguAGGCCGcCGCGUCGCu -3'
miRNA:   3'- ucgUgGCUUUUu--UUCGGC-GCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 17392 0.67 0.685901
Target:  5'- cGCGCCGAcgcaccgcuucGAuucAGCgGCGC-CCACg -3'
miRNA:   3'- uCGUGGCU-----------UUuuuUCGgCGCGcGGUG- -5'
26778 3' -53.2 NC_005808.1 + 25765 0.67 0.684762
Target:  5'- uGCAuCCGAAcuAugcGCCGCgugaacuGCGCCGCc -3'
miRNA:   3'- uCGU-GGCUUuuUuu-CGGCG-------CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 2443 0.67 0.674489
Target:  5'- aGGCGCCGAAAcugcGGCCcagGCGCuCGCc -3'
miRNA:   3'- -UCGUGGCUUUuuu-UCGGcg-CGCG-GUG- -5'
26778 3' -53.2 NC_005808.1 + 23350 0.67 0.674489
Target:  5'- cGaCGCCGAGAAGuucauGGGCC-UGaCGCCGCg -3'
miRNA:   3'- uC-GUGGCUUUUU-----UUCGGcGC-GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 9683 0.67 0.674489
Target:  5'- cAGCcaGCCGugc--AGGCCGUG-GCCGCa -3'
miRNA:   3'- -UCG--UGGCuuuuuUUCGGCGCgCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 29977 0.67 0.674489
Target:  5'- cAGCAgCGAugccGAGCgCGUcgGCGCCAUg -3'
miRNA:   3'- -UCGUgGCUuuuuUUCG-GCG--CGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 31695 0.67 0.674489
Target:  5'- gGGCAggucgccauuCCGGugGAGGAAuacGCCGCGCGCauCGCg -3'
miRNA:   3'- -UCGU----------GGCU--UUUUUU---CGGCGCGCG--GUG- -5'
26778 3' -53.2 NC_005808.1 + 10485 0.67 0.674489
Target:  5'- cAGCACCGGcccGAAcgGGCCGUGCuCUu- -3'
miRNA:   3'- -UCGUGGCU---UUUuuUCGGCGCGcGGug -5'
26778 3' -53.2 NC_005808.1 + 38474 0.67 0.663033
Target:  5'- uGCGCCGGGAAGcaacGCUGCaGCGCagGCu -3'
miRNA:   3'- uCGUGGCUUUUUuu--CGGCG-CGCGg-UG- -5'
26778 3' -53.2 NC_005808.1 + 31142 0.67 0.663033
Target:  5'- cGcCACUGAAAAGcuGCCG-GUGUCGCg -3'
miRNA:   3'- uC-GUGGCUUUUUuuCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 15262 0.67 0.663033
Target:  5'- cGGC-CCGGccuacguGGAAAGCaaCGCGCGCCu- -3'
miRNA:   3'- -UCGuGGCUu------UUUUUCG--GCGCGCGGug -5'
26778 3' -53.2 NC_005808.1 + 41960 0.67 0.651546
Target:  5'- gGGCACCGAcucGAcgccGGAcGCCGUGU-CCACg -3'
miRNA:   3'- -UCGUGGCU---UU----UUUuCGGCGCGcGGUG- -5'
26778 3' -53.2 NC_005808.1 + 5807 0.67 0.651546
Target:  5'- cAGCGCCagcGGAuAGucGGGCaugGCGUGCCGCa -3'
miRNA:   3'- -UCGUGG---CUUuUU--UUCGg--CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 39575 0.67 0.651546
Target:  5'- cAGCACUGGAAGGacGAGCaGCuaugaccCGCCGCg -3'
miRNA:   3'- -UCGUGGCUUUUU--UUCGgCGc------GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.