miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 13119 0.7 0.482749
Target:  5'- --gACCGAcgcgGAAcuGGCCGCGCGCUuCg -3'
miRNA:   3'- ucgUGGCU----UUUuuUCGGCGCGCGGuG- -5'
26778 3' -53.2 NC_005808.1 + 13222 0.68 0.582611
Target:  5'- cGCGCCGAGuccGAGGGCUGgGgcaagGCCACc -3'
miRNA:   3'- uCGUGGCUUu--UUUUCGGCgCg----CGGUG- -5'
26778 3' -53.2 NC_005808.1 + 13289 0.72 0.364156
Target:  5'- cAGCGCCGAuu----GCaGCGCGCCGg -3'
miRNA:   3'- -UCGUGGCUuuuuuuCGgCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 13535 0.68 0.605518
Target:  5'- cGCGCCGAAcugucGGCCGCcugacucgGUGcCCACg -3'
miRNA:   3'- uCGUGGCUUuuuu-UCGGCG--------CGC-GGUG- -5'
26778 3' -53.2 NC_005808.1 + 13766 0.67 0.651546
Target:  5'- cAGCGCCGAcau-GAGCgcaaucuugUGCGCGUUGCu -3'
miRNA:   3'- -UCGUGGCUuuuuUUCG---------GCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 13843 0.69 0.526288
Target:  5'- cGCGCCGAGAAGcgcaCCGCGCuggacgauGCCAa -3'
miRNA:   3'- uCGUGGCUUUUUuuc-GGCGCG--------CGGUg -5'
26778 3' -53.2 NC_005808.1 + 13894 0.72 0.358777
Target:  5'- uGCGCCGAcagcaucgaccuuguGAAcGAcGUgGCGCGCCGCg -3'
miRNA:   3'- uCGUGGCU---------------UUUuUU-CGgCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 13950 0.68 0.621618
Target:  5'- cGGCACCGAucuggcacugcgcggGAAcuGGCCGgccucaucCGCGCC-Cg -3'
miRNA:   3'- -UCGUGGCU---------------UUUuuUCGGC--------GCGCGGuG- -5'
26778 3' -53.2 NC_005808.1 + 14023 0.7 0.461638
Target:  5'- cGCuGCCGGu----GGCCgacguGCGCGCCGCg -3'
miRNA:   3'- uCG-UGGCUuuuuuUCGG-----CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 14386 0.71 0.440006
Target:  5'- cGCGCCGcgGAacguaggcguagcGAAGCUGgGCGUCGCc -3'
miRNA:   3'- uCGUGGCuuUU-------------UUUCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 14759 0.69 0.54861
Target:  5'- gAGCAgCGGcgc--GGCCG-GCGCCACc -3'
miRNA:   3'- -UCGUgGCUuuuuuUCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 14792 0.7 0.461638
Target:  5'- cGCGCgCGAGGAcgugcugcGGCUGCGCGgCGCg -3'
miRNA:   3'- uCGUG-GCUUUUuu------UCGGCGCGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 14894 0.67 0.685901
Target:  5'- cGGCGgCGAGccgcuGCCgGCGCGCgGCc -3'
miRNA:   3'- -UCGUgGCUUuuuuuCGG-CGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 15089 0.72 0.382487
Target:  5'- cGCGCCGAGAAgcuggcggccGAGGCCGC-CGgCAUc -3'
miRNA:   3'- uCGUGGCUUUU----------UUUCGGCGcGCgGUG- -5'
26778 3' -53.2 NC_005808.1 + 15096 0.66 0.740761
Target:  5'- uGCugCGA-------CCGCGCGCCGu -3'
miRNA:   3'- uCGugGCUuuuuuucGGCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 15262 0.67 0.663033
Target:  5'- cGGC-CCGGccuacguGGAAAGCaaCGCGCGCCu- -3'
miRNA:   3'- -UCGuGGCUu------UUUUUCG--GCGCGCGGug -5'
26778 3' -53.2 NC_005808.1 + 15297 0.66 0.730855
Target:  5'- gGGCGUCGu-GGGAAGCCuucgccaagGCGCGCgGCg -3'
miRNA:   3'- -UCGUGGCuuUUUUUCGG---------CGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 15449 0.66 0.719746
Target:  5'- cGGCGCgUGggGGAcuucGAGUgaUGCGCGCgGCg -3'
miRNA:   3'- -UCGUG-GCuuUUU----UUCG--GCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 16061 0.71 0.401421
Target:  5'- cGCGCaCGu--GGccGCCGCGCGCgGCg -3'
miRNA:   3'- uCGUG-GCuuuUUuuCGGCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 16444 0.73 0.329354
Target:  5'- cGCAUCGcAGAcggcGAGCCGCuGCGCCAa -3'
miRNA:   3'- uCGUGGCuUUUu---UUCGGCG-CGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.