miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26778 3' -53.2 NC_005808.1 + 33811 0.66 0.698387
Target:  5'- cGGCgcgGCCGAcccaucgugcGCCGCGUGCUGCc -3'
miRNA:   3'- -UCG---UGGCUuuuuuu----CGGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 33683 0.68 0.617015
Target:  5'- cGC-CCGA-----AGCCaucgaGCGCGCCGCc -3'
miRNA:   3'- uCGuGGCUuuuuuUCGG-----CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 33384 0.72 0.391879
Target:  5'- cGCGCCGcAGAAcgugcGCCGCGcCGCCGa -3'
miRNA:   3'- uCGUGGCuUUUUuu---CGGCGC-GCGGUg -5'
26778 3' -53.2 NC_005808.1 + 33253 0.68 0.57122
Target:  5'- aAGCaACUGcAAAAGGAugccGCCGCcCGCCGCg -3'
miRNA:   3'- -UCG-UGGC-UUUUUUU----CGGCGcGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 33063 0.68 0.582611
Target:  5'- cGCACUGGccGAAcAGGGCCGCaGCaugauGCCACu -3'
miRNA:   3'- uCGUGGCU--UUU-UUUCGGCG-CG-----CGGUG- -5'
26778 3' -53.2 NC_005808.1 + 32871 0.72 0.373245
Target:  5'- cGGCGCCGAGAuu--GUCGCGC-CCGa -3'
miRNA:   3'- -UCGUGGCUUUuuuuCGGCGCGcGGUg -5'
26778 3' -53.2 NC_005808.1 + 32721 0.72 0.373245
Target:  5'- cGCGCCuGGccGAGAAGCaGCGCGCCGg -3'
miRNA:   3'- uCGUGGcUU--UUUUUCGgCGCGCGGUg -5'
26778 3' -53.2 NC_005808.1 + 32611 0.77 0.197817
Target:  5'- uGGC-CCGcgucAAGGGCCGCGaCGCCGCg -3'
miRNA:   3'- -UCGuGGCuuu-UUUUCGGCGC-GCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 32402 1.11 0.000763
Target:  5'- cAGCACCGAAAAAAAGCCGCGCGCCACg -3'
miRNA:   3'- -UCGUGGCUUUUUUUCGGCGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 32161 0.66 0.705164
Target:  5'- gGGCGCCauugccaagcuguuGGAAAugaaaaguggcGAGGCCaucgGCGCGCUGCa -3'
miRNA:   3'- -UCGUGG--------------CUUUU-----------UUUCGG----CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 31933 0.67 0.64004
Target:  5'- cGCACUGGAcac-GGCgGCGCGUuuCACg -3'
miRNA:   3'- uCGUGGCUUuuuuUCGgCGCGCG--GUG- -5'
26778 3' -53.2 NC_005808.1 + 31896 0.66 0.719746
Target:  5'- aAGCaAUCGGcc-GAGGCCguGCGCGCUGCc -3'
miRNA:   3'- -UCG-UGGCUuuuUUUCGG--CGCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 31832 0.66 0.708542
Target:  5'- --gGCCGAAGAAcugcGGGCCgaagucgaGCGCGCCc- -3'
miRNA:   3'- ucgUGGCUUUUU----UUCGG--------CGCGCGGug -5'
26778 3' -53.2 NC_005808.1 + 31783 0.68 0.582611
Target:  5'- --aGCCGGAAGGAuucAGCCGCGCcgaGgCGCa -3'
miRNA:   3'- ucgUGGCUUUUUU---UCGGCGCG---CgGUG- -5'
26778 3' -53.2 NC_005808.1 + 31704 0.69 0.514156
Target:  5'- cAGCACCGccugaccagcccGCCGCGCGCgGg -3'
miRNA:   3'- -UCGUGGCuuuuuuu-----CGGCGCGCGgUg -5'
26778 3' -53.2 NC_005808.1 + 31695 0.67 0.674489
Target:  5'- gGGCAggucgccauuCCGGugGAGGAAuacGCCGCGCGCauCGCg -3'
miRNA:   3'- -UCGU----------GGCU--UUUUUU---CGGCGCGCG--GUG- -5'
26778 3' -53.2 NC_005808.1 + 31505 0.69 0.537409
Target:  5'- cGCAgCCGAcAAGGuGCuCGCGCGCgACc -3'
miRNA:   3'- uCGU-GGCUuUUUUuCG-GCGCGCGgUG- -5'
26778 3' -53.2 NC_005808.1 + 31142 0.67 0.663033
Target:  5'- cGcCACUGAAAAGcuGCCG-GUGUCGCg -3'
miRNA:   3'- uC-GUGGCUUUUUuuCGGCgCGCGGUG- -5'
26778 3' -53.2 NC_005808.1 + 30912 0.68 0.605518
Target:  5'- uGCACCGGAuacaGAAGGGCaucaauCGCGCCcCa -3'
miRNA:   3'- uCGUGGCUU----UUUUUCGgc----GCGCGGuG- -5'
26778 3' -53.2 NC_005808.1 + 30064 0.7 0.472134
Target:  5'- uGGUGCCGGAAAuauccuuugugcGgcGcCCGgGCGCCACg -3'
miRNA:   3'- -UCGUGGCUUUU------------UuuC-GGCgCGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.